miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33070 3' -51.3 NC_007497.1 + 27100 0.67 0.817094
Target:  5'- cCG-GCAGcgGAGCGGau-ACGGCCGc -3'
miRNA:   3'- aGCuCGUCuuUUCGCUgcuUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 16120 0.68 0.744772
Target:  5'- uUCGaAGUGGAu--GCGGCGcAUGGCCGa -3'
miRNA:   3'- -AGC-UCGUCUuuuCGCUGCuUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 8430 0.68 0.755578
Target:  5'- gUGGGCAGAGcAAGCuuucacGCGAcacuggaguuccGCAGCCGa -3'
miRNA:   3'- aGCUCGUCUU-UUCGc-----UGCU------------UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 34568 0.68 0.755578
Target:  5'- aUGAGC-GAGccuGCG-CGGGCGGCCGc -3'
miRNA:   3'- aGCUCGuCUUuu-CGCuGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 978 0.68 0.759863
Target:  5'- cCGAGCAGuacgcGGcCGACGAuccgugagccagcugAUAGCCGc -3'
miRNA:   3'- aGCUCGUCuuu--UC-GCUGCU---------------UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 20553 0.68 0.766247
Target:  5'- gCGAGUAcaaccguGAGCGACuGAaagcACAGCCGa -3'
miRNA:   3'- aGCUCGUcuu----UUCGCUG-CU----UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 36661 0.67 0.797306
Target:  5'- cUGGGCGGucucGAcauacagcacGCGaACGAACAGCCGc -3'
miRNA:   3'- aGCUCGUCuu--UU----------CGC-UGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 24523 0.67 0.8073
Target:  5'- aCGcGCGGGAuugccacGGCGGCGAA-GGCCGu -3'
miRNA:   3'- aGCuCGUCUUu------UCGCUGCUUgUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 15922 0.67 0.816124
Target:  5'- -aGAGCGcacggauGAAGAaCGACGAAUGGCUGa -3'
miRNA:   3'- agCUCGU-------CUUUUcGCUGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 29043 0.69 0.733841
Target:  5'- cUCGAGCAGAAAuuuGCGGaagcccGGCAGCa- -3'
miRNA:   3'- -AGCUCGUCUUUu--CGCUgc----UUGUCGgc -5'
33070 3' -51.3 NC_007497.1 + 4251 0.69 0.7228
Target:  5'- cCGAGCAucac-GCGAUGAGCGGCg- -3'
miRNA:   3'- aGCUCGUcuuuuCGCUGCUUGUCGgc -5'
33070 3' -51.3 NC_007497.1 + 17064 0.69 0.711661
Target:  5'- -gGGGCGGAAGGGgcggaaccgaUGGCGAuccCGGCCGg -3'
miRNA:   3'- agCUCGUCUUUUC----------GCUGCUu--GUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 26080 0.75 0.386087
Target:  5'- cUCGAGCAGAucguGGCccaGCGAACuuuuGCCGa -3'
miRNA:   3'- -AGCUCGUCUuu--UCGc--UGCUUGu---CGGC- -5'
33070 3' -51.3 NC_007497.1 + 18629 0.74 0.405067
Target:  5'- -aGGGCGGAGcGGCGugGAAagaGGCUGa -3'
miRNA:   3'- agCUCGUCUUuUCGCugCUUg--UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 41518 0.74 0.405067
Target:  5'- uUCcGGCAGGAAGGC-ACGAGCcGCCGc -3'
miRNA:   3'- -AGcUCGUCUUUUCGcUGCUUGuCGGC- -5'
33070 3' -51.3 NC_007497.1 + 23267 0.73 0.465366
Target:  5'- gCGGGCGGcu--GCGACGAGCuGGUCGa -3'
miRNA:   3'- aGCUCGUCuuuuCGCUGCUUG-UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 17353 0.73 0.493984
Target:  5'- cCGuAGCAGAugaugcagcagugcGGGGCGAUGAGCGGgCGa -3'
miRNA:   3'- aGC-UCGUCU--------------UUUCGCUGCUUGUCgGC- -5'
33070 3' -51.3 NC_007497.1 + 23321 0.73 0.497214
Target:  5'- aCGAGCAGcAAAAGCauccGCGAgcGCGGCUGu -3'
miRNA:   3'- aGCUCGUC-UUUUCGc---UGCU--UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 36823 0.69 0.68914
Target:  5'- cUCGAGCAGcgGcucgcgcacAGCGACGGuaAC-GCCGu -3'
miRNA:   3'- -AGCUCGUCuuU---------UCGCUGCU--UGuCGGC- -5'
33070 3' -51.3 NC_007497.1 + 34354 0.69 0.700437
Target:  5'- cUCGAccuccuGCAGcAAAGGCG-UGAGCuGCCGg -3'
miRNA:   3'- -AGCU------CGUC-UUUUCGCuGCUUGuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.