miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33070 3' -51.3 NC_007497.1 + 978 0.68 0.759863
Target:  5'- cCGAGCAGuacgcGGcCGACGAuccgugagccagcugAUAGCCGc -3'
miRNA:   3'- aGCUCGUCuuu--UC-GCUGCU---------------UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 2874 0.66 0.879157
Target:  5'- -gGuGCGGAuauGGGCcucGGgGAGCGGCCGa -3'
miRNA:   3'- agCuCGUCUu--UUCG---CUgCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 3944 0.73 0.497214
Target:  5'- aCGAcccGCAGAgggcgauuuucGAGGCGACGGGCaaucGGCCGc -3'
miRNA:   3'- aGCU---CGUCU-----------UUUCGCUGCUUG----UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 4113 0.75 0.37682
Target:  5'- gCGAGCGGuucGGgGACGcGGCGGCCGa -3'
miRNA:   3'- aGCUCGUCuuuUCgCUGC-UUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 4251 0.69 0.7228
Target:  5'- cCGAGCAucac-GCGAUGAGCGGCg- -3'
miRNA:   3'- aGCUCGUcuuuuCGCUGCUUGUCGgc -5'
33070 3' -51.3 NC_007497.1 + 4340 0.68 0.766247
Target:  5'- cCGuGCuGAucGGCGACGcACAcGCCGc -3'
miRNA:   3'- aGCuCGuCUuuUCGCUGCuUGU-CGGC- -5'
33070 3' -51.3 NC_007497.1 + 5035 0.69 0.733841
Target:  5'- cCGGGcCAGAAGGGacgaaaGACGGacuggGCGGCCa -3'
miRNA:   3'- aGCUC-GUCUUUUCg-----CUGCU-----UGUCGGc -5'
33070 3' -51.3 NC_007497.1 + 6087 0.66 0.854052
Target:  5'- cCGAGCAGuucuccGGCGACGGAaucucgacaAGCgCGu -3'
miRNA:   3'- aGCUCGUCuuu---UCGCUGCUUg--------UCG-GC- -5'
33070 3' -51.3 NC_007497.1 + 8430 0.68 0.755578
Target:  5'- gUGGGCAGAGcAAGCuuucacGCGAcacuggaguuccGCAGCCGa -3'
miRNA:   3'- aGCUCGUCUU-UUCGc-----UGCU------------UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 10810 0.73 0.486485
Target:  5'- gUCGuaGGCAGAGGcagcGGUGGCGAAUcucgGGCCGa -3'
miRNA:   3'- -AGC--UCGUCUUU----UCGCUGCUUG----UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 13484 0.7 0.654944
Target:  5'- gUCGAGCAGAGGGauuuCGGCGu-CAuGCCGg -3'
miRNA:   3'- -AGCUCGUCUUUUc---GCUGCuuGU-CGGC- -5'
33070 3' -51.3 NC_007497.1 + 13581 0.69 0.711661
Target:  5'- gCGcGCAccAGA-CGGCGAACAGCCGa -3'
miRNA:   3'- aGCuCGUcuUUUcGCUGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 14334 0.76 0.324437
Target:  5'- aUCGcGCAGGAAAGuCGACGAAguGCUc -3'
miRNA:   3'- -AGCuCGUCUUUUC-GCUGCUUguCGGc -5'
33070 3' -51.3 NC_007497.1 + 14851 0.84 0.106532
Target:  5'- cCGAGCAGuc-GGCGACGAGCAaGCCa -3'
miRNA:   3'- aGCUCGUCuuuUCGCUGCUUGU-CGGc -5'
33070 3' -51.3 NC_007497.1 + 14904 0.7 0.632011
Target:  5'- gUUGGGC-GAu--GCGGCGAACAGCg- -3'
miRNA:   3'- -AGCUCGuCUuuuCGCUGCUUGUCGgc -5'
33070 3' -51.3 NC_007497.1 + 15922 0.67 0.816124
Target:  5'- -aGAGCGcacggauGAAGAaCGACGAAUGGCUGa -3'
miRNA:   3'- agCUCGU-------CUUUUcGCUGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 16120 0.68 0.744772
Target:  5'- uUCGaAGUGGAu--GCGGCGcAUGGCCGa -3'
miRNA:   3'- -AGC-UCGUCUuuuCGCUGCuUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 17064 0.69 0.711661
Target:  5'- -gGGGCGGAAGGGgcggaaccgaUGGCGAuccCGGCCGg -3'
miRNA:   3'- agCUCGUCUUUUC----------GCUGCUu--GUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 17193 0.67 0.826677
Target:  5'- gCGAGaGGAAucGCGGCcgccccGCAGCCGc -3'
miRNA:   3'- aGCUCgUCUUuuCGCUGcu----UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 17353 0.73 0.493984
Target:  5'- cCGuAGCAGAugaugcagcagugcGGGGCGAUGAGCGGgCGa -3'
miRNA:   3'- aGC-UCGUCU--------------UUUCGCUGCUUGUCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.