miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33092 5' -56.9 NC_007497.1 + 41516 1.12 0.000293
Target:  5'- uUGCGCGGCACGCUGAACGACCAAGCCg -3'
miRNA:   3'- -ACGCGCCGUGCGACUUGCUGGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 34605 0.85 0.032463
Target:  5'- -cCGCGGCACGCUccguugcuGCGGCCAAGCCg -3'
miRNA:   3'- acGCGCCGUGCGAcu------UGCUGGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 20280 0.84 0.03992
Target:  5'- -aCGCGGCGCGaUGGGCGACCGAGCa -3'
miRNA:   3'- acGCGCCGUGCgACUUGCUGGUUCGg -5'
33092 5' -56.9 NC_007497.1 + 34064 0.81 0.061973
Target:  5'- gGCGCGcGCACGCUGGcaGCGAUgGAcGCCg -3'
miRNA:   3'- aCGCGC-CGUGCGACU--UGCUGgUU-CGG- -5'
33092 5' -56.9 NC_007497.1 + 39955 0.77 0.113388
Target:  5'- aUGgGCGGCACGaC-GAGCGGCUggGUCg -3'
miRNA:   3'- -ACgCGCCGUGC-GaCUUGCUGGuuCGG- -5'
33092 5' -56.9 NC_007497.1 + 40817 0.76 0.145961
Target:  5'- gGCGCGaGCGuCGCUGcAGCGGCC--GCCa -3'
miRNA:   3'- aCGCGC-CGU-GCGAC-UUGCUGGuuCGG- -5'
33092 5' -56.9 NC_007497.1 + 32284 0.75 0.16756
Target:  5'- aGCGCGGCACugcaGCUGAauauuccgauaACGAUCGagggcggaacGGCCg -3'
miRNA:   3'- aCGCGCCGUG----CGACU-----------UGCUGGU----------UCGG- -5'
33092 5' -56.9 NC_007497.1 + 42456 0.74 0.176975
Target:  5'- gGCGCGGCGaGCUGAAUgguGGCaCGGGUCg -3'
miRNA:   3'- aCGCGCCGUgCGACUUG---CUG-GUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 34720 0.73 0.225351
Target:  5'- cGCGCGaGCGCGCcGAACGaggcGCCAccgcGGCg -3'
miRNA:   3'- aCGCGC-CGUGCGaCUUGC----UGGU----UCGg -5'
33092 5' -56.9 NC_007497.1 + 3784 0.72 0.237523
Target:  5'- gGC-CGGCGCGaUGAACaaGACCGAGCa -3'
miRNA:   3'- aCGcGCCGUGCgACUUG--CUGGUUCGg -5'
33092 5' -56.9 NC_007497.1 + 36180 0.72 0.256808
Target:  5'- aUGCGUGGgCugGCgucGACGGCCGgcGGCUa -3'
miRNA:   3'- -ACGCGCC-GugCGac-UUGCUGGU--UCGG- -5'
33092 5' -56.9 NC_007497.1 + 11571 0.72 0.263515
Target:  5'- cGCGCGGCugaaguaaaaGCGCggGAaaugGCGGCCAgaugAGCUg -3'
miRNA:   3'- aCGCGCCG----------UGCGa-CU----UGCUGGU----UCGG- -5'
33092 5' -56.9 NC_007497.1 + 34849 0.72 0.270364
Target:  5'- cUGCGCGGC-CGCgGucucgcgcGCGAUCAcGGCCg -3'
miRNA:   3'- -ACGCGCCGuGCGaCu-------UGCUGGU-UCGG- -5'
33092 5' -56.9 NC_007497.1 + 32693 0.71 0.291035
Target:  5'- cGCGCGGUuCGCUGcGCGAgCGGcauuggcGCCu -3'
miRNA:   3'- aCGCGCCGuGCGACuUGCUgGUU-------CGG- -5'
33092 5' -56.9 NC_007497.1 + 15231 0.71 0.306764
Target:  5'- gGCGagaGcGCGCGCUGGAUGuauGCCcuGAGCCc -3'
miRNA:   3'- aCGCg--C-CGUGCGACUUGC---UGG--UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 38169 0.71 0.314479
Target:  5'- -cCGUGGCGCGcCUGAGCG-CCuuAGUCg -3'
miRNA:   3'- acGCGCCGUGC-GACUUGCuGGu-UCGG- -5'
33092 5' -56.9 NC_007497.1 + 26404 0.71 0.314479
Target:  5'- aGCGCaccgagaucuGGUACaGCcGGACG-CCGAGCCg -3'
miRNA:   3'- aCGCG----------CCGUG-CGaCUUGCuGGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 9999 0.71 0.314479
Target:  5'- gGUGCGGUAcuauacCGCUcGAAUGA-CAAGCCa -3'
miRNA:   3'- aCGCGCCGU------GCGA-CUUGCUgGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 454 0.7 0.336857
Target:  5'- aGUGCGGCGCGCgguuacgguuacGAAUGGCaaAAGCUg -3'
miRNA:   3'- aCGCGCCGUGCGa-----------CUUGCUGg-UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 39528 0.7 0.338499
Target:  5'- gGUGCGGaa-GCUGAaggACGGCCAAGg- -3'
miRNA:   3'- aCGCGCCgugCGACU---UGCUGGUUCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.