miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33092 5' -56.9 NC_007497.1 + 278 0.66 0.550087
Target:  5'- -aCGCGaGCACcacuucaGC-GGGCGACCAcccAGCCa -3'
miRNA:   3'- acGCGC-CGUG-------CGaCUUGCUGGU---UCGG- -5'
33092 5' -56.9 NC_007497.1 + 454 0.7 0.336857
Target:  5'- aGUGCGGCGCGCgguuacgguuacGAAUGGCaaAAGCUg -3'
miRNA:   3'- aCGCGCCGUGCGa-----------CUUGCUGg-UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 585 0.69 0.408865
Target:  5'- cGCGgGGUACgGCgGAAC-ACCAgaacAGCCa -3'
miRNA:   3'- aCGCgCCGUG-CGaCUUGcUGGU----UCGG- -5'
33092 5' -56.9 NC_007497.1 + 949 0.67 0.487669
Target:  5'- cGCGCGccGUACGCgGuAAUGGCUgAAGCCc -3'
miRNA:   3'- aCGCGC--CGUGCGaC-UUGCUGG-UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 1416 0.67 0.508487
Target:  5'- gGCGUGGCGCaGCguccGAuugcGCGGCCAcggaaaGGCg -3'
miRNA:   3'- aCGCGCCGUG-CGa---CU----UGCUGGU------UCGg -5'
33092 5' -56.9 NC_007497.1 + 2063 0.67 0.498029
Target:  5'- aUGCGUGaCACGCUGcGCaGCCGGGgaCCg -3'
miRNA:   3'- -ACGCGCcGUGCGACuUGcUGGUUC--GG- -5'
33092 5' -56.9 NC_007497.1 + 2343 0.66 0.540384
Target:  5'- cGCGCaagaaguugauGGCACGCcgugcGAAgcgccCGACCGuGGCCg -3'
miRNA:   3'- aCGCG-----------CCGUGCGa----CUU-----GCUGGU-UCGG- -5'
33092 5' -56.9 NC_007497.1 + 2459 0.66 0.571833
Target:  5'- cGCGCGGCgacgcgccaucacGCGCaUGuauuCGuCCGGGCg -3'
miRNA:   3'- aCGCGCCG-------------UGCG-ACuu--GCuGGUUCGg -5'
33092 5' -56.9 NC_007497.1 + 3129 0.68 0.467262
Target:  5'- --aGCGGCucugucucGCGCUcGGACGGCgCcGGCCa -3'
miRNA:   3'- acgCGCCG--------UGCGA-CUUGCUG-GuUCGG- -5'
33092 5' -56.9 NC_007497.1 + 3269 0.67 0.477412
Target:  5'- cGCGCuGGUuaucGCGgaGAcCGGCCcGGGCCu -3'
miRNA:   3'- aCGCG-CCG----UGCgaCUuGCUGG-UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 3375 0.68 0.467262
Target:  5'- cGUGCGGCgcacuGCGCgcGGGCGAUau-GCCu -3'
miRNA:   3'- aCGCGCCG-----UGCGa-CUUGCUGguuCGG- -5'
33092 5' -56.9 NC_007497.1 + 3399 0.68 0.467262
Target:  5'- aGCGCcGCACGCcGAugGAC--GGCg -3'
miRNA:   3'- aCGCGcCGUGCGaCUugCUGguUCGg -5'
33092 5' -56.9 NC_007497.1 + 3784 0.72 0.237523
Target:  5'- gGC-CGGCGCGaUGAACaaGACCGAGCa -3'
miRNA:   3'- aCGcGCCGUGCgACUUG--CUGGUUCGg -5'
33092 5' -56.9 NC_007497.1 + 4124 0.67 0.475373
Target:  5'- cGCgGCGGUACGCgagcgguucgggGAcgcgGCGGCCGAGaCg -3'
miRNA:   3'- aCG-CGCCGUGCGa-----------CU----UGCUGGUUCgG- -5'
33092 5' -56.9 NC_007497.1 + 4178 0.66 0.551169
Target:  5'- gGCuGCGGUGCGC--GACG-CgCGGGCCg -3'
miRNA:   3'- aCG-CGCCGUGCGacUUGCuG-GUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 4862 0.69 0.408865
Target:  5'- gGUGCGGCaugACGCcGAGCGACUacGAGg- -3'
miRNA:   3'- aCGCGCCG---UGCGaCUUGCUGG--UUCgg -5'
33092 5' -56.9 NC_007497.1 + 5172 0.69 0.381424
Target:  5'- cGCGCGGaaCGCGCUuacccGACGACUggGUUc -3'
miRNA:   3'- aCGCGCC--GUGCGAc----UUGCUGGuuCGG- -5'
33092 5' -56.9 NC_007497.1 + 5448 0.66 0.551169
Target:  5'- cGgGCGaGCGCGCcGGACGuacgcgUCAGGUCg -3'
miRNA:   3'- aCgCGC-CGUGCGaCUUGCu-----GGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 5811 0.66 0.551169
Target:  5'- cGUGCGGUGCgGUUGAaucccucgACGGCuCGGuGCCg -3'
miRNA:   3'- aCGCGCCGUG-CGACU--------UGCUG-GUU-CGG- -5'
33092 5' -56.9 NC_007497.1 + 8755 0.66 0.549006
Target:  5'- gGCGCaGGCAaGCUGugccgacgacGGCGACCuuccacaucugcAGCCg -3'
miRNA:   3'- aCGCG-CCGUgCGAC----------UUGCUGGu-----------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.