miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33092 5' -56.9 NC_007497.1 + 14279 0.67 0.477412
Target:  5'- aUGCGUGGCA-GCUGGcgcaugcacuGCGucGCCAgcgagcGGCCc -3'
miRNA:   3'- -ACGCGCCGUgCGACU----------UGC--UGGU------UCGG- -5'
33092 5' -56.9 NC_007497.1 + 17372 0.68 0.437504
Target:  5'- aGUGCGGgGCGaUGAGCGgGCgAAGCg -3'
miRNA:   3'- aCGCGCCgUGCgACUUGC-UGgUUCGg -5'
33092 5' -56.9 NC_007497.1 + 28227 0.68 0.437504
Target:  5'- aGCGCaGGCACGCcGAAgCGAauaCGgacuGCCg -3'
miRNA:   3'- aCGCG-CCGUGCGaCUU-GCUg--GUu---CGG- -5'
33092 5' -56.9 NC_007497.1 + 37930 0.68 0.437504
Target:  5'- cGC-CGGC-CGCaUGAAUGGCUcuGCCu -3'
miRNA:   3'- aCGcGCCGuGCG-ACUUGCUGGuuCGG- -5'
33092 5' -56.9 NC_007497.1 + 3129 0.68 0.467262
Target:  5'- --aGCGGCucugucucGCGCUcGGACGGCgCcGGCCa -3'
miRNA:   3'- acgCGCCG--------UGCGA-CUUGCUG-GuUCGG- -5'
33092 5' -56.9 NC_007497.1 + 3375 0.68 0.467262
Target:  5'- cGUGCGGCgcacuGCGCgcGGGCGAUau-GCCu -3'
miRNA:   3'- aCGCGCCG-----UGCGa-CUUGCUGguuCGG- -5'
33092 5' -56.9 NC_007497.1 + 15819 0.67 0.474355
Target:  5'- cGCaGCGGCcuucaugcuacccaACGCUGccauauGCGAgCCGAGCa -3'
miRNA:   3'- aCG-CGCCG--------------UGCGACu-----UGCU-GGUUCGg -5'
33092 5' -56.9 NC_007497.1 + 15276 0.67 0.477412
Target:  5'- cGCGaGGCGCGCauccagUGGAuCGACUggaugcucgacGAGCCg -3'
miRNA:   3'- aCGCgCCGUGCG------ACUU-GCUGG-----------UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 11669 0.67 0.477412
Target:  5'- cGCGCGGCcCGgaaccgGcACGGCCGggaguAGCCg -3'
miRNA:   3'- aCGCGCCGuGCga----CuUGCUGGU-----UCGG- -5'
33092 5' -56.9 NC_007497.1 + 34744 0.68 0.436531
Target:  5'- cGCGUaGCGCGuCUGAuCGAUCGuucccuuGGCCg -3'
miRNA:   3'- aCGCGcCGUGC-GACUuGCUGGU-------UCGG- -5'
33092 5' -56.9 NC_007497.1 + 17018 0.68 0.418282
Target:  5'- cUGCGCaGGCugGCa-AGCaGGCCGcGCCg -3'
miRNA:   3'- -ACGCG-CCGugCGacUUG-CUGGUuCGG- -5'
33092 5' -56.9 NC_007497.1 + 34007 0.69 0.408865
Target:  5'- aGCGUGcGCGCGCcccUGu-CGGCCGcGGCCc -3'
miRNA:   3'- aCGCGC-CGUGCG---ACuuGCUGGU-UCGG- -5'
33092 5' -56.9 NC_007497.1 + 20280 0.84 0.03992
Target:  5'- -aCGCGGCGCGaUGGGCGACCGAGCa -3'
miRNA:   3'- acGCGCCGUGCgACUUGCUGGUUCGg -5'
33092 5' -56.9 NC_007497.1 + 40817 0.76 0.145961
Target:  5'- gGCGCGaGCGuCGCUGcAGCGGCC--GCCa -3'
miRNA:   3'- aCGCGC-CGU-GCGAC-UUGCUGGuuCGG- -5'
33092 5' -56.9 NC_007497.1 + 11571 0.72 0.263515
Target:  5'- cGCGCGGCugaaguaaaaGCGCggGAaaugGCGGCCAgaugAGCUg -3'
miRNA:   3'- aCGCGCCG----------UGCGa-CU----UGCUGGU----UCGG- -5'
33092 5' -56.9 NC_007497.1 + 34849 0.72 0.270364
Target:  5'- cUGCGCGGC-CGCgGucucgcgcGCGAUCAcGGCCg -3'
miRNA:   3'- -ACGCGCCGuGCGaCu-------UGCUGGU-UCGG- -5'
33092 5' -56.9 NC_007497.1 + 38169 0.71 0.314479
Target:  5'- -cCGUGGCGCGcCUGAGCG-CCuuAGUCg -3'
miRNA:   3'- acGCGCCGUGC-GACUUGCuGGu-UCGG- -5'
33092 5' -56.9 NC_007497.1 + 36443 0.69 0.390433
Target:  5'- cUGCGCGcGCA-GCUcGGcaaGCGuccuGCCGAGCCg -3'
miRNA:   3'- -ACGCGC-CGUgCGA-CU---UGC----UGGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 33435 0.69 0.399581
Target:  5'- aGCGCaGGCGCaUUGAcgccgauacgcGCGACCugcgcGGCCg -3'
miRNA:   3'- aCGCG-CCGUGcGACU-----------UGCUGGu----UCGG- -5'
33092 5' -56.9 NC_007497.1 + 585 0.69 0.408865
Target:  5'- cGCGgGGUACgGCgGAAC-ACCAgaacAGCCa -3'
miRNA:   3'- aCGCgCCGUG-CGaCUUGcUGGU----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.