miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 5' -51.5 NC_007497.1 + 315 1.11 0.001342
Target:  5'- gCCGAGAUCACGCAAGCAGAACACGCAa -3'
miRNA:   3'- -GGCUCUAGUGCGUUCGUCUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 10350 0.83 0.115216
Target:  5'- uCCGGGAUCAUGCGAGCAGcGCgACGUc -3'
miRNA:   3'- -GGCUCUAGUGCGUUCGUCuUG-UGCGu -5'
33097 5' -51.5 NC_007497.1 + 40113 0.77 0.267564
Target:  5'- uUCGGGAUCGCGC-AGCGGcuuCACGCc -3'
miRNA:   3'- -GGCUCUAGUGCGuUCGUCuu-GUGCGu -5'
33097 5' -51.5 NC_007497.1 + 28116 0.76 0.321021
Target:  5'- aCGcGGUCACGCGAGCG--GCGCGCu -3'
miRNA:   3'- gGCuCUAGUGCGUUCGUcuUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 34121 0.74 0.420283
Target:  5'- aCGAG-UCGCGCAAGCu---CGCGCGa -3'
miRNA:   3'- gGCUCuAGUGCGUUCGucuuGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 11005 0.73 0.440229
Target:  5'- gCCGAGG-CGCgGCAGGCcggguugauugcGGGGCGCGCGg -3'
miRNA:   3'- -GGCUCUaGUG-CGUUCG------------UCUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 10202 0.73 0.460703
Target:  5'- gCCGcGGUCGCGCAaacGGCGGccgccCGCGCAg -3'
miRNA:   3'- -GGCuCUAGUGCGU---UCGUCuu---GUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 10291 0.73 0.48167
Target:  5'- -aGAGAUCgcgGCGCAAG-GGGGCACGCc -3'
miRNA:   3'- ggCUCUAG---UGCGUUCgUCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 43325 0.73 0.492326
Target:  5'- -gGAGAUCAC-CGAGaCGGAGCACgGCGu -3'
miRNA:   3'- ggCUCUAGUGcGUUC-GUCUUGUG-CGU- -5'
33097 5' -51.5 NC_007497.1 + 1076 0.72 0.513953
Target:  5'- aCGgcAGGUCACGagGGGCAGcGCGCGCGa -3'
miRNA:   3'- gGC--UCUAGUGCg-UUCGUCuUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 18458 0.72 0.535958
Target:  5'- aCCGAGAUCugGUAcAGCcGGACGC-CGa -3'
miRNA:   3'- -GGCUCUAGugCGU-UCGuCUUGUGcGU- -5'
33097 5' -51.5 NC_007497.1 + 11739 0.72 0.547085
Target:  5'- -aGAGGUCGCGCGagAGCuGGcCGCGCu -3'
miRNA:   3'- ggCUCUAGUGCGU--UCGuCUuGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 21623 0.72 0.547085
Target:  5'- aCGAGcgCGCGgGagagcuGGCGGAAUACGCu -3'
miRNA:   3'- gGCUCuaGUGCgU------UCGUCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 10106 0.72 0.551556
Target:  5'- gCCGAGcgCgaaguagcgaucgcgACGCAGGCGcgcGAGCGCGCc -3'
miRNA:   3'- -GGCUCuaG---------------UGCGUUCGU---CUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 43938 0.71 0.569546
Target:  5'- ---cGGUCA-GCAAGCAGAACGcCGCGg -3'
miRNA:   3'- ggcuCUAGUgCGUUCGUCUUGU-GCGU- -5'
33097 5' -51.5 NC_007497.1 + 42325 0.71 0.580864
Target:  5'- cCCGAGAucagggUCACGCAGcGCAGcAC-CGCc -3'
miRNA:   3'- -GGCUCU------AGUGCGUU-CGUCuUGuGCGu -5'
33097 5' -51.5 NC_007497.1 + 9219 0.71 0.591089
Target:  5'- gCCGAcgcGAUCGCGCGcggcaugGGcCGGGGCACGUc -3'
miRNA:   3'- -GGCU---CUAGUGCGU-------UC-GUCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 17658 0.7 0.615055
Target:  5'- gCCGAuc-CGCGCAAgGCGGGGCgGCGCAu -3'
miRNA:   3'- -GGCUcuaGUGCGUU-CGUCUUG-UGCGU- -5'
33097 5' -51.5 NC_007497.1 + 9711 0.7 0.649388
Target:  5'- gCgGAGGUCgcgGCGCAGGCcGAgcuugccggcauGCGCGCGa -3'
miRNA:   3'- -GgCUCUAG---UGCGUUCGuCU------------UGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 17020 0.7 0.649388
Target:  5'- gCGcAGG-CugGCAAGCAGGcCGCGCc -3'
miRNA:   3'- gGC-UCUaGugCGUUCGUCUuGUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.