miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 5' -51.5 NC_007497.1 + 30145 0.67 0.821722
Target:  5'- cUCGGGAcCGCGguAGCGccACugGCAc -3'
miRNA:   3'- -GGCUCUaGUGCguUCGUcuUGugCGU- -5'
33097 5' -51.5 NC_007497.1 + 29028 0.68 0.739294
Target:  5'- cCCGuuGUCGCGCGccucgAGCAGAAauuUGCGg -3'
miRNA:   3'- -GGCucUAGUGCGU-----UCGUCUUgu-GCGU- -5'
33097 5' -51.5 NC_007497.1 + 27889 0.68 0.750141
Target:  5'- aCCGGGA-CcUGCGAGaacGAGCGCGCGu -3'
miRNA:   3'- -GGCUCUaGuGCGUUCgu-CUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 27592 0.68 0.760858
Target:  5'- gCCGAcugGAUCACGCAGuuGCAGGcgaauCGCGg -3'
miRNA:   3'- -GGCU---CUAGUGCGUU--CGUCUugu--GCGU- -5'
33097 5' -51.5 NC_007497.1 + 26222 0.67 0.78185
Target:  5'- aCGAGG-CGCGCccagAAGUAGAACAccugcccgacCGCAa -3'
miRNA:   3'- gGCUCUaGUGCG----UUCGUCUUGU----------GCGU- -5'
33097 5' -51.5 NC_007497.1 + 12217 0.67 0.789044
Target:  5'- gCUGAGAUCagcgccaucggGCGCGaccaugaugcucagGGCAGAGCuaggcCGCAg -3'
miRNA:   3'- -GGCUCUAG-----------UGCGU--------------UCGUCUUGu----GCGU- -5'
33097 5' -51.5 NC_007497.1 + 18519 0.67 0.792101
Target:  5'- cCCGAcGAUU-CGCGAGCGGGucgAgGCGCu -3'
miRNA:   3'- -GGCU-CUAGuGCGUUCGUCU---UgUGCGu -5'
33097 5' -51.5 NC_007497.1 + 8245 0.67 0.802171
Target:  5'- gCUGAGAagCGCGguGGCAGuagUugGCAu -3'
miRNA:   3'- -GGCUCUa-GUGCguUCGUCuu-GugCGU- -5'
33097 5' -51.5 NC_007497.1 + 31237 0.67 0.802171
Target:  5'- gUCGAGccaucGUCggaaGCGCcgcccAGCAGGACACGCc -3'
miRNA:   3'- -GGCUC-----UAG----UGCGu----UCGUCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 31474 0.69 0.717263
Target:  5'- aCCGGGAcagaggACGCGAGCGGGAU-CGUAa -3'
miRNA:   3'- -GGCUCUag----UGCGUUCGUCUUGuGCGU- -5'
33097 5' -51.5 NC_007497.1 + 4250 0.69 0.694868
Target:  5'- gCCGAGcAUCACGCGaugAGCGGcguguGCGuCGCc -3'
miRNA:   3'- -GGCUC-UAGUGCGU---UCGUCu----UGU-GCGu -5'
33097 5' -51.5 NC_007497.1 + 36785 0.69 0.683566
Target:  5'- gCCGcc-UCGCGCAgcggaucgAGcCAGAACGCGCGg -3'
miRNA:   3'- -GGCucuAGUGCGU--------UC-GUCUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 40113 0.77 0.267564
Target:  5'- uUCGGGAUCGCGC-AGCGGcuuCACGCc -3'
miRNA:   3'- -GGCUCUAGUGCGuUCGUCuu-GUGCGu -5'
33097 5' -51.5 NC_007497.1 + 34121 0.74 0.420283
Target:  5'- aCGAG-UCGCGCAAGCu---CGCGCGa -3'
miRNA:   3'- gGCUCuAGUGCGUUCGucuuGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 10291 0.73 0.48167
Target:  5'- -aGAGAUCgcgGCGCAAG-GGGGCACGCc -3'
miRNA:   3'- ggCUCUAG---UGCGUUCgUCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 1076 0.72 0.513953
Target:  5'- aCGgcAGGUCACGagGGGCAGcGCGCGCGa -3'
miRNA:   3'- gGC--UCUAGUGCg-UUCGUCuUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 42325 0.71 0.580864
Target:  5'- cCCGAGAucagggUCACGCAGcGCAGcAC-CGCc -3'
miRNA:   3'- -GGCUCU------AGUGCGUU-CGUCuUGuGCGu -5'
33097 5' -51.5 NC_007497.1 + 17020 0.7 0.649388
Target:  5'- gCGcAGG-CugGCAAGCAGGcCGCGCc -3'
miRNA:   3'- gGC-UCUaGugCGUUCGUCUuGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 29513 0.7 0.660814
Target:  5'- gUCGcGGAUCaACGCAuAGCAgucGAGCACGCc -3'
miRNA:   3'- -GGC-UCUAG-UGCGU-UCGU---CUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 4734 0.7 0.660814
Target:  5'- uCCGAaacGUCGCGCuuGUAGAACGCGa- -3'
miRNA:   3'- -GGCUc--UAGUGCGuuCGUCUUGUGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.