miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 5' -51.5 NC_007497.1 + 315 1.11 0.001342
Target:  5'- gCCGAGAUCACGCAAGCAGAACACGCAa -3'
miRNA:   3'- -GGCUCUAGUGCGUUCGUCUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 606 0.66 0.866644
Target:  5'- cCCG-GAUCAgGCuGAGCAGGcAguCGCGa -3'
miRNA:   3'- -GGCuCUAGUgCG-UUCGUCU-UguGCGU- -5'
33097 5' -51.5 NC_007497.1 + 1076 0.72 0.513953
Target:  5'- aCGgcAGGUCACGagGGGCAGcGCGCGCGa -3'
miRNA:   3'- gGC--UCUAGUGCg-UUCGUCuUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 2540 0.66 0.858152
Target:  5'- cCCGGGcgUGCGCGccGGCGGccGCgGCGCAu -3'
miRNA:   3'- -GGCUCuaGUGCGU--UCGUCu-UG-UGCGU- -5'
33097 5' -51.5 NC_007497.1 + 3327 0.7 0.649388
Target:  5'- aCGAGggCGCGCuguuGCGcGGCACGCu -3'
miRNA:   3'- gGCUCuaGUGCGuu--CGUcUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 3690 0.68 0.72833
Target:  5'- aCCGGcGUCAcCGCgAAGCGGAucaGCGCGg -3'
miRNA:   3'- -GGCUcUAGU-GCG-UUCGUCUug-UGCGU- -5'
33097 5' -51.5 NC_007497.1 + 4250 0.69 0.694868
Target:  5'- gCCGAGcAUCACGCGaugAGCGGcguguGCGuCGCc -3'
miRNA:   3'- -GGCUC-UAGUGCGU---UCGUCu----UGU-GCGu -5'
33097 5' -51.5 NC_007497.1 + 4641 0.66 0.84041
Target:  5'- aUCaAGAUCGCgGCAGcGCAGAugGgCGCGa -3'
miRNA:   3'- -GGcUCUAGUG-CGUU-CGUCUugU-GCGU- -5'
33097 5' -51.5 NC_007497.1 + 4734 0.7 0.660814
Target:  5'- uCCGAaacGUCGCGCuuGUAGAACGCGa- -3'
miRNA:   3'- -GGCUc--UAGUGCGuuCGUCUUGUGCgu -5'
33097 5' -51.5 NC_007497.1 + 5081 0.68 0.72833
Target:  5'- aCCGAGuUCGC-CAAGCAGGAag-GCAa -3'
miRNA:   3'- -GGCUCuAGUGcGUUCGUCUUgugCGU- -5'
33097 5' -51.5 NC_007497.1 + 6890 0.66 0.849404
Target:  5'- gCGucGAUCGCuCAGGCcGAGgGCGCAa -3'
miRNA:   3'- gGCu-CUAGUGcGUUCGuCUUgUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 6923 0.69 0.706105
Target:  5'- aCgGAGAUCGCGCGGGCGaucGAuCAgGUg -3'
miRNA:   3'- -GgCUCUAGUGCGUUCGU---CUuGUgCGu -5'
33097 5' -51.5 NC_007497.1 + 7514 0.68 0.738203
Target:  5'- uCCGAGAUCGacgcaaccacgcuCGCGAGCgaagagaaGGAAUACGa- -3'
miRNA:   3'- -GGCUCUAGU-------------GCGUUCG--------UCUUGUGCgu -5'
33097 5' -51.5 NC_007497.1 + 8245 0.67 0.802171
Target:  5'- gCUGAGAagCGCGguGGCAGuagUugGCAu -3'
miRNA:   3'- -GGCUCUa-GUGCguUCGUCuu-GugCGU- -5'
33097 5' -51.5 NC_007497.1 + 8423 0.66 0.831179
Target:  5'- -gGAGA--GCGUggGCAGAGCAaGCu -3'
miRNA:   3'- ggCUCUagUGCGuuCGUCUUGUgCGu -5'
33097 5' -51.5 NC_007497.1 + 8452 0.67 0.821721
Target:  5'- gCGAuGGUCGCGUcGGCAGuuuuccAgGCGCAg -3'
miRNA:   3'- gGCU-CUAGUGCGuUCGUCu-----UgUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 8794 0.67 0.812048
Target:  5'- aUCGAGGcugCGCGCGGGUcgcuucgcGGAUACGCGg -3'
miRNA:   3'- -GGCUCUa--GUGCGUUCGu-------CUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 9161 0.67 0.791084
Target:  5'- gUCGGGccaGUUGCGCGGGCAGGACcuuaagaGCGUu -3'
miRNA:   3'- -GGCUC---UAGUGCGUUCGUCUUG-------UGCGu -5'
33097 5' -51.5 NC_007497.1 + 9219 0.71 0.591089
Target:  5'- gCCGAcgcGAUCGCGCGcggcaugGGcCGGGGCACGUc -3'
miRNA:   3'- -GGCU---CUAGUGCGU-------UC-GUCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 9711 0.7 0.649388
Target:  5'- gCgGAGGUCgcgGCGCAGGCcGAgcuugccggcauGCGCGCGa -3'
miRNA:   3'- -GgCUCUAG---UGCGUUCGuCU------------UGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.