miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33098 3' -53.2 NC_007497.1 + 40528 0.66 0.765914
Target:  5'- gGCGACGcacacgccgcucAUC-GCGUGAUGCucGGCgGCc -3'
miRNA:   3'- -CGCUGC------------UAGaCGCAUUACG--UCGgCGu -5'
33098 3' -53.2 NC_007497.1 + 23232 0.66 0.765914
Target:  5'- uCGACGAgCUGCGcccacGCcucuGCCGCAg -3'
miRNA:   3'- cGCUGCUaGACGCauua-CGu---CGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 853 0.66 0.762754
Target:  5'- cGCGGCGuUCUGCuUGcugaccguguucacGUGCGcGUCGCAa -3'
miRNA:   3'- -CGCUGCuAGACGcAU--------------UACGU-CGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 8451 0.66 0.744619
Target:  5'- aGCGAUGGUC-GCGUcg-GCAGUuuuccaggCGCAg -3'
miRNA:   3'- -CGCUGCUAGaCGCAuuaCGUCG--------GCGU- -5'
33098 3' -53.2 NC_007497.1 + 10197 0.66 0.744619
Target:  5'- aGCGugccGCGGUC-GCGcaaAcgGCGGCCGCc -3'
miRNA:   3'- -CGC----UGCUAGaCGCa--UuaCGUCGGCGu -5'
33098 3' -53.2 NC_007497.1 + 34563 0.66 0.744619
Target:  5'- uGCGcaugaGCGAgcCUGCGcgg-GCGGCCGCc -3'
miRNA:   3'- -CGC-----UGCUa-GACGCauuaCGUCGGCGu -5'
33098 3' -53.2 NC_007497.1 + 31094 0.66 0.733782
Target:  5'- uGCGGCGAcccaUGCGgcgucccGUGCGGCCccuGCGg -3'
miRNA:   3'- -CGCUGCUag--ACGCau-----UACGUCGG---CGU- -5'
33098 3' -53.2 NC_007497.1 + 35403 0.66 0.733782
Target:  5'- cGCGACGAUCU-CGgucUGCAGgCGa- -3'
miRNA:   3'- -CGCUGCUAGAcGCauuACGUCgGCgu -5'
33098 3' -53.2 NC_007497.1 + 31028 0.66 0.733782
Target:  5'- uGCGGCGAcccaUGCGgcgucccGUGCGGCCccuGCGg -3'
miRNA:   3'- -CGCUGCUag--ACGCau-----UACGUCGG---CGU- -5'
33098 3' -53.2 NC_007497.1 + 28243 0.66 0.732692
Target:  5'- aGCGAauacggacugccgUGAgCUGCGUGuucUGCAccuGCCGCAc -3'
miRNA:   3'- -CGCU-------------GCUaGACGCAUu--ACGU---CGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 23255 0.67 0.722837
Target:  5'- aGUGGCGGgaugGCGg---GCGGCUGCGa -3'
miRNA:   3'- -CGCUGCUaga-CGCauuaCGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 14222 0.67 0.70067
Target:  5'- gGCGGCGAUgugCUGCGUuuucauggGCAcCUGCAg -3'
miRNA:   3'- -CGCUGCUA---GACGCAuua-----CGUcGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 9929 0.67 0.70067
Target:  5'- uGCGGCcguGAUCgcGCGcGAgaccGCGGCCGCGc -3'
miRNA:   3'- -CGCUG---CUAGa-CGCaUUa---CGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 30462 0.67 0.689474
Target:  5'- uCGACuuUcCUGCGcGAUGCAgaGCCGCGg -3'
miRNA:   3'- cGCUGcuA-GACGCaUUACGU--CGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 39772 0.67 0.689474
Target:  5'- cGCGucguCGAggaucugCUGCGUA--GCAGCCGgGu -3'
miRNA:   3'- -CGCu---GCUa------GACGCAUuaCGUCGGCgU- -5'
33098 3' -53.2 NC_007497.1 + 42059 0.67 0.678218
Target:  5'- -aGACGAUCUGCcacguugacGUGAgGCGGCCu-- -3'
miRNA:   3'- cgCUGCUAGACG---------CAUUaCGUCGGcgu -5'
33098 3' -53.2 NC_007497.1 + 9307 0.67 0.678218
Target:  5'- uCGACGcgCUGCGgAAUGCcGgCGCu -3'
miRNA:   3'- cGCUGCuaGACGCaUUACGuCgGCGu -5'
33098 3' -53.2 NC_007497.1 + 9829 0.67 0.678218
Target:  5'- cGCGAgCGAUUgaaGCa-AGUGCGGUCGCAc -3'
miRNA:   3'- -CGCU-GCUAGa--CGcaUUACGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 38058 0.67 0.678218
Target:  5'- cCGGCGAauccuUCUGCuUGAgcGCGGCCGUg -3'
miRNA:   3'- cGCUGCU-----AGACGcAUUa-CGUCGGCGu -5'
33098 3' -53.2 NC_007497.1 + 21580 0.68 0.655579
Target:  5'- gGCGAcgcccuCGAUCUGCuUGccgacGUGCucGGCCGCGu -3'
miRNA:   3'- -CGCU------GCUAGACGcAU-----UACG--UCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.