miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33098 5' -58.3 NC_007497.1 + 39177 0.66 0.517796
Target:  5'- cGCUgGCGGCGACcuucaucGCGCGCaUCGGCu -3'
miRNA:   3'- -CGA-CGCUGCUGuca----CGCGUG-GGUCGc -5'
33098 5' -58.3 NC_007497.1 + 16466 0.66 0.517796
Target:  5'- uGCUGCGugGAC--UGCGgCGgCCuGCu -3'
miRNA:   3'- -CGACGCugCUGucACGC-GUgGGuCGc -5'
33098 5' -58.3 NC_007497.1 + 4198 0.66 0.507375
Target:  5'- --aGCGuCGAUGGcGCGCGCCgGGUa -3'
miRNA:   3'- cgaCGCuGCUGUCaCGCGUGGgUCGc -5'
33098 5' -58.3 NC_007497.1 + 14279 0.66 0.507375
Target:  5'- -aUGCGugG-CAGcugGCGCAUgcacugcgucgCCAGCGa -3'
miRNA:   3'- cgACGCugCuGUCa--CGCGUG-----------GGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 2548 0.66 0.486808
Target:  5'- uGC-GCGcCGGCGGccgcgGCGCAUCCuuGCGa -3'
miRNA:   3'- -CGaCGCuGCUGUCa----CGCGUGGGu-CGC- -5'
33098 5' -58.3 NC_007497.1 + 41109 0.66 0.486808
Target:  5'- cGCgGUGACGcCGGUGCcCuCCCAGUu -3'
miRNA:   3'- -CGaCGCUGCuGUCACGcGuGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 12173 0.66 0.485789
Target:  5'- cGCUGCGcgaGCGGCAuugGCGCcuguguucgguugGCUCGGCa -3'
miRNA:   3'- -CGACGC---UGCUGUca-CGCG-------------UGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 4922 0.66 0.476673
Target:  5'- --aGCGGCuuuuCAGUGCGaACCCAGUu -3'
miRNA:   3'- cgaCGCUGcu--GUCACGCgUGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 27509 0.66 0.476673
Target:  5'- -aUGCGACGACAGcucccgGC-C-CCCAGUa -3'
miRNA:   3'- cgACGCUGCUGUCa-----CGcGuGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 35595 0.66 0.466644
Target:  5'- aGCaGCGuuACGACAGUccucacauGCGCACUCGGa- -3'
miRNA:   3'- -CGaCGC--UGCUGUCA--------CGCGUGGGUCgc -5'
33098 5' -58.3 NC_007497.1 + 40514 0.67 0.456725
Target:  5'- gGCgugGCGuuucCGGCGGUa-GCGCCCGGCu -3'
miRNA:   3'- -CGa--CGCu---GCUGUCAcgCGUGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 27996 0.67 0.437234
Target:  5'- -gUGuCGGCGAUcagcgagcuGUGCGCAUUCGGCGu -3'
miRNA:   3'- cgAC-GCUGCUGu--------CACGCGUGGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 38158 0.67 0.437234
Target:  5'- cGC-GcCGGCGACcGUgGCGCGCCUgAGCGc -3'
miRNA:   3'- -CGaC-GCUGCUGuCA-CGCGUGGG-UCGC- -5'
33098 5' -58.3 NC_007497.1 + 21281 0.67 0.427669
Target:  5'- cGCUGCugGGCG-CGGcgGCGgGCgCCGGCGu -3'
miRNA:   3'- -CGACG--CUGCuGUCa-CGCgUG-GGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 27009 0.67 0.418229
Target:  5'- --gGCGcGCGACuGUGCGaCGCCCgacGGCa -3'
miRNA:   3'- cgaCGC-UGCUGuCACGC-GUGGG---UCGc -5'
33098 5' -58.3 NC_007497.1 + 18001 0.67 0.408918
Target:  5'- gGCgauCGACGACGGcGCGCAgaUUCAGCa -3'
miRNA:   3'- -CGac-GCUGCUGUCaCGCGU--GGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 30929 0.67 0.408918
Target:  5'- -aUGCGGCGuCcGUGCG-GCCCAuGCGg -3'
miRNA:   3'- cgACGCUGCuGuCACGCgUGGGU-CGC- -5'
33098 5' -58.3 NC_007497.1 + 36421 0.68 0.399736
Target:  5'- -gUGCGAacuCGGCAGccgacaucUGCGCGCgCAGCu -3'
miRNA:   3'- cgACGCU---GCUGUC--------ACGCGUGgGUCGc -5'
33098 5' -58.3 NC_007497.1 + 42331 0.68 0.399736
Target:  5'- cGC-GUGAUGGCGcGUcgccGCGCgaacGCCCAGCGg -3'
miRNA:   3'- -CGaCGCUGCUGU-CA----CGCG----UGGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 15964 0.68 0.390688
Target:  5'- cGCUGUcGCGAUGG-GCGCuucgaugauGCUCGGCGg -3'
miRNA:   3'- -CGACGcUGCUGUCaCGCG---------UGGGUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.