Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33098 | 5' | -58.3 | NC_007497.1 | + | 560 | 1.09 | 0.00037 |
Target: 5'- uGCUGCGACGACAGUGCGCACCCAGCGc -3' miRNA: 3'- -CGACGCUGCUGUCACGCGUGGGUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 30218 | 0.75 | 0.128397 |
Target: 5'- aGCgGCGACGACAGcgugaacucgaccUGCaCGCCCGGCu -3' miRNA: 3'- -CGaCGCUGCUGUC-------------ACGcGUGGGUCGc -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 11612 | 0.74 | 0.164857 |
Target: 5'- aGCUGCuACcGCAuUGCgGCGCCCAGCGa -3' miRNA: 3'- -CGACGcUGcUGUcACG-CGUGGGUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 11529 | 0.72 | 0.221127 |
Target: 5'- uGCUGgaaGAUGAauaGGUGCucaGCACCCAGCc -3' miRNA: 3'- -CGACg--CUGCUg--UCACG---CGUGGGUCGc -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 34679 | 0.71 | 0.258255 |
Target: 5'- uGCUGCGauccgaGCGGCAGccUGCGCGCgCAGaUGg -3' miRNA: 3'- -CGACGC------UGCUGUC--ACGCGUGgGUC-GC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 20884 | 0.71 | 0.264918 |
Target: 5'- cCUGCaauGGCGACAcgaaggacGUGCGCGCcggCCAGCGc -3' miRNA: 3'- cGACG---CUGCUGU--------CACGCGUG---GGUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 33985 | 0.71 | 0.251731 |
Target: 5'- uGCUGCGGCGucCAu--CGCugCCAGCGu -3' miRNA: 3'- -CGACGCUGCu-GUcacGCGugGGUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 23273 | 0.71 | 0.245343 |
Target: 5'- gGCUGCGACGAgcUGGUcgacacgcugcuGCagGCugCCAGCGg -3' miRNA: 3'- -CGACGCUGCU--GUCA------------CG--CGugGGUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 30498 | 0.71 | 0.258255 |
Target: 5'- cGCUgGCGACG-CAGUGCauGCGCC-AGCu -3' miRNA: 3'- -CGA-CGCUGCuGUCACG--CGUGGgUCGc -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 9680 | 0.7 | 0.300326 |
Target: 5'- gGCUGCGGCGaaacuGCAGaaCGCACaggCGGCGg -3' miRNA: 3'- -CGACGCUGC-----UGUCacGCGUGg--GUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 2443 | 0.69 | 0.31548 |
Target: 5'- cGCUGCGAaacaUGGCGGUGCuGCGCU--GCGu -3' miRNA: 3'- -CGACGCU----GCUGUCACG-CGUGGguCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 30892 | 0.69 | 0.347498 |
Target: 5'- cCUGCGGCGACccaugcgGCGUcCCCuGCGg -3' miRNA: 3'- cGACGCUGCUGuca----CGCGuGGGuCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 28112 | 0.69 | 0.31548 |
Target: 5'- --cGCGACGcggucacgcgaGCGGcGCGCuCCCGGCGu -3' miRNA: 3'- cgaCGCUGC-----------UGUCaCGCGuGGGUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 43101 | 0.69 | 0.339281 |
Target: 5'- uUUGCGGCgcuccagcacgGACGG-GUGCGCCCAaGCGu -3' miRNA: 3'- cGACGCUG-----------CUGUCaCGCGUGGGU-CGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 758 | 0.69 | 0.331205 |
Target: 5'- cCUGCGGuCGAUAGcuUGCGCucgauugcaGCCCAuGCGg -3' miRNA: 3'- cGACGCU-GCUGUC--ACGCG---------UGGGU-CGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 10777 | 0.68 | 0.372996 |
Target: 5'- gGCcGCGGcCGACAGgggcgcGCGCACgCUGGCa -3' miRNA: 3'- -CGaCGCU-GCUGUCa-----CGCGUG-GGUCGc -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 8330 | 0.68 | 0.379126 |
Target: 5'- cGCUGCGGCucGGCAGgacgcuugccgagcUGCGCGCgCAGa- -3' miRNA: 3'- -CGACGCUG--CUGUC--------------ACGCGUGgGUCgc -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 26886 | 0.68 | 0.381774 |
Target: 5'- cGCUGaCGACGcgguACAGcUGCGCGgUgAGCGc -3' miRNA: 3'- -CGAC-GCUGC----UGUC-ACGCGUgGgUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 32741 | 0.68 | 0.381774 |
Target: 5'- aGCUgGUGAacGCuuccucgGCGCGCCCAGCGg -3' miRNA: 3'- -CGA-CGCUgcUGuca----CGCGUGGGUCGC- -5' |
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33098 | 5' | -58.3 | NC_007497.1 | + | 36421 | 0.68 | 0.399736 |
Target: 5'- -gUGCGAacuCGGCAGccgacaucUGCGCGCgCAGCu -3' miRNA: 3'- cgACGCU---GCUGUC--------ACGCGUGgGUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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