miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33102 5' -55.9 NC_007497.1 + 12262 0.66 0.635272
Target:  5'- -gCUAgGCCgcaGCGCGGAU--UGCCg -3'
miRNA:   3'- agGGUgUGGaagCGCGCCUAguACGG- -5'
33102 5' -55.9 NC_007497.1 + 40336 0.66 0.624188
Target:  5'- gCCUugACCUcggucggcccuUcCGCGCGGAcggaaaUgAUGCCu -3'
miRNA:   3'- aGGGugUGGA-----------A-GCGCGCCU------AgUACGG- -5'
33102 5' -55.9 NC_007497.1 + 1689 0.66 0.60205
Target:  5'- aUCCagUACGCCUUCGUGCGcagCAcucccgGCCg -3'
miRNA:   3'- -AGG--GUGUGGAAGCGCGCcuaGUa-----CGG- -5'
33102 5' -55.9 NC_007497.1 + 27094 0.66 0.60205
Target:  5'- -aCCGCGCCggcagCGgaGCGGAUacgGCCg -3'
miRNA:   3'- agGGUGUGGaa---GCg-CGCCUAguaCGG- -5'
33102 5' -55.9 NC_007497.1 + 33204 0.67 0.591016
Target:  5'- aUCgACGCCUgauCGCGGAUCAgGCUc -3'
miRNA:   3'- aGGgUGUGGAagcGCGCCUAGUaCGG- -5'
33102 5' -55.9 NC_007497.1 + 21277 0.67 0.587712
Target:  5'- gUCgCGCugCUggGCGCGGcggcgggcgccggcGUCGUGCa -3'
miRNA:   3'- -AGgGUGugGAagCGCGCC--------------UAGUACGg -5'
33102 5' -55.9 NC_007497.1 + 35146 0.67 0.586612
Target:  5'- cUCCGCGCCUUCucaagagacaccaGCGCGGcagCGcuuuccuccuuuguUGCCg -3'
miRNA:   3'- aGGGUGUGGAAG-------------CGCGCCua-GU--------------ACGG- -5'
33102 5' -55.9 NC_007497.1 + 28505 0.67 0.580017
Target:  5'- gUCgaGCACCUUCGCGCGcgcGGUCGaauggagGCUg -3'
miRNA:   3'- -AGggUGUGGAAGCGCGC---CUAGUa------CGG- -5'
33102 5' -55.9 NC_007497.1 + 33239 0.67 0.558159
Target:  5'- gUCCgACAgCUUCGUGCGcuUCGccGCCa -3'
miRNA:   3'- -AGGgUGUgGAAGCGCGCcuAGUa-CGG- -5'
33102 5' -55.9 NC_007497.1 + 2632 0.67 0.544076
Target:  5'- gCgCGCugCUcgacggcgagucgaUgGCGCGGAUCGUGUg -3'
miRNA:   3'- aGgGUGugGA--------------AgCGCGCCUAGUACGg -5'
33102 5' -55.9 NC_007497.1 + 36312 0.67 0.53654
Target:  5'- aCCUuCACCUUCGCGCccugcgccuGGAaaacUGCCg -3'
miRNA:   3'- aGGGuGUGGAAGCGCG---------CCUagu-ACGG- -5'
33102 5' -55.9 NC_007497.1 + 10432 0.68 0.51522
Target:  5'- gCUCACGCCUUUGCuGCaGGAggUCGagcGCCa -3'
miRNA:   3'- aGGGUGUGGAAGCG-CG-CCU--AGUa--CGG- -5'
33102 5' -55.9 NC_007497.1 + 33905 0.68 0.504689
Target:  5'- gUUCCACG-CUUCG-GCGGc-CAUGCCg -3'
miRNA:   3'- -AGGGUGUgGAAGCgCGCCuaGUACGG- -5'
33102 5' -55.9 NC_007497.1 + 35568 0.68 0.504689
Target:  5'- gCCCAUGCCg-CGCGCG-AUCGcgucgGCCa -3'
miRNA:   3'- aGGGUGUGGaaGCGCGCcUAGUa----CGG- -5'
33102 5' -55.9 NC_007497.1 + 206 0.68 0.491139
Target:  5'- gUCUguCGCCgcggUGCGCGacgaugugaucgccGAUCGUGCCa -3'
miRNA:   3'- -AGGguGUGGaa--GCGCGC--------------CUAGUACGG- -5'
33102 5' -55.9 NC_007497.1 + 30101 0.68 0.483913
Target:  5'- aUCUCGuucaugcuuCACCUcgCGCGCGGAgCAUGgCg -3'
miRNA:   3'- -AGGGU---------GUGGAa-GCGCGCCUaGUACgG- -5'
33102 5' -55.9 NC_007497.1 + 42446 0.69 0.464564
Target:  5'- -gCCGCGCaagaaaccgauggCGCGCGGAUCGUGgucCCg -3'
miRNA:   3'- agGGUGUGgaa----------GCGCGCCUAGUAC---GG- -5'
33102 5' -55.9 NC_007497.1 + 3519 0.69 0.424248
Target:  5'- aCCUuCACCUUcaCGCGCGcGUCGucuUGCCa -3'
miRNA:   3'- aGGGuGUGGAA--GCGCGCcUAGU---ACGG- -5'
33102 5' -55.9 NC_007497.1 + 16770 0.7 0.39611
Target:  5'- cCCCGCACCcgCGCcgGCGGAcgagCA-GCCc -3'
miRNA:   3'- aGGGUGUGGaaGCG--CGCCUa---GUaCGG- -5'
33102 5' -55.9 NC_007497.1 + 29869 0.71 0.369203
Target:  5'- gCCCGCAgCacUCGCGCGGAUacucggcgaGUGCg -3'
miRNA:   3'- aGGGUGUgGa-AGCGCGCCUAg--------UACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.