miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33103 3' -55 NC_007497.1 + 4560 1.14 0.000374
Target:  5'- gCCCAUGCAACGAGCGCCGCGUCUUGCg -3'
miRNA:   3'- -GGGUACGUUGCUCGCGGCGCAGAACG- -5'
33103 3' -55 NC_007497.1 + 788 0.8 0.102956
Target:  5'- gCCCAUGCGgcaucgaucacgccgACG-GCGCC-CGUCUUGCu -3'
miRNA:   3'- -GGGUACGU---------------UGCuCGCGGcGCAGAACG- -5'
33103 3' -55 NC_007497.1 + 21294 0.78 0.147071
Target:  5'- ----gGCGGCGGGCGCCGgCGUCgUGCa -3'
miRNA:   3'- ggguaCGUUGCUCGCGGC-GCAGaACG- -5'
33103 3' -55 NC_007497.1 + 42355 0.78 0.15123
Target:  5'- gCCAUGUuuCGcAGCGCuCGCGUCUcGCg -3'
miRNA:   3'- gGGUACGuuGC-UCGCG-GCGCAGAaCG- -5'
33103 3' -55 NC_007497.1 + 30990 0.77 0.178489
Target:  5'- gCCCAUGCGGCG-GCcccuGCgGCGUCccgUGCg -3'
miRNA:   3'- -GGGUACGUUGCuCG----CGgCGCAGa--ACG- -5'
33103 3' -55 NC_007497.1 + 31089 0.77 0.178489
Target:  5'- gCCCGUGCGGCGAcccaUGCgGCGUCccgUGCg -3'
miRNA:   3'- -GGGUACGUUGCUc---GCGgCGCAGa--ACG- -5'
33103 3' -55 NC_007497.1 + 30901 0.74 0.273167
Target:  5'- aCCCAUGCGGCGuccccugcggcGGCccauGCgGCGUCcgUGCg -3'
miRNA:   3'- -GGGUACGUUGC-----------UCG----CGgCGCAGa-ACG- -5'
33103 3' -55 NC_007497.1 + 35812 0.74 0.273168
Target:  5'- gCCGUcGCGuCGAGCggcuGCCGCGUugCUUGCg -3'
miRNA:   3'- gGGUA-CGUuGCUCG----CGGCGCA--GAACG- -5'
33103 3' -55 NC_007497.1 + 35568 0.73 0.3179
Target:  5'- gCCCAUGCcGCGcGCGaUCGCGUCg-GCc -3'
miRNA:   3'- -GGGUACGuUGCuCGC-GGCGCAGaaCG- -5'
33103 3' -55 NC_007497.1 + 30945 0.72 0.333988
Target:  5'- gCCCAUGCGGCGcccccugcggcGGCcccuGCgGCGUCccgUGCg -3'
miRNA:   3'- -GGGUACGUUGC-----------UCG----CGgCGCAGa--ACG- -5'
33103 3' -55 NC_007497.1 + 40650 0.71 0.376769
Target:  5'- aCCGU-CGACGAGUGCCGCGa---GCg -3'
miRNA:   3'- gGGUAcGUUGCUCGCGGCGCagaaCG- -5'
33103 3' -55 NC_007497.1 + 1691 0.71 0.376769
Target:  5'- gUCCGUGCug-GAGCGCCGCaaagagaUUGCg -3'
miRNA:   3'- -GGGUACGuugCUCGCGGCGcag----AACG- -5'
33103 3' -55 NC_007497.1 + 31035 0.71 0.376769
Target:  5'- aCCCAUGCGGCGucccgugcGGCcccuGCgGCGUCcccUGCg -3'
miRNA:   3'- -GGGUACGUUGC--------UCG----CGgCGCAGa--ACG- -5'
33103 3' -55 NC_007497.1 + 34559 0.71 0.407898
Target:  5'- aCCGUGCGcaugagcgagccugcGCGGGCgGCCGCcgUUUGCg -3'
miRNA:   3'- gGGUACGU---------------UGCUCG-CGGCGcaGAACG- -5'
33103 3' -55 NC_007497.1 + 5820 0.7 0.420218
Target:  5'- gCCCGgcaGCuucgucggcugacgAGCGAGCGCgGCGagUUGCu -3'
miRNA:   3'- -GGGUa--CG--------------UUGCUCGCGgCGCagAACG- -5'
33103 3' -55 NC_007497.1 + 8445 0.69 0.482934
Target:  5'- -gCAUGCAGCGAugGUCGCGUCg-GCa -3'
miRNA:   3'- ggGUACGUUGCUcgCGGCGCAGaaCG- -5'
33103 3' -55 NC_007497.1 + 10001 0.69 0.493306
Target:  5'- gCgCA-GCAGCGAcGCGUCGCGUUggagGCc -3'
miRNA:   3'- -GgGUaCGUUGCU-CGCGGCGCAGaa--CG- -5'
33103 3' -55 NC_007497.1 + 41076 0.69 0.493306
Target:  5'- gCCgAUGUuGCGaAGCGCCGCG-CUgauccGCu -3'
miRNA:   3'- -GGgUACGuUGC-UCGCGGCGCaGAa----CG- -5'
33103 3' -55 NC_007497.1 + 3692 0.69 0.514348
Target:  5'- cUCCAgaugGuCGGCGuAGCGCUGCucgGUCUUGUu -3'
miRNA:   3'- -GGGUa---C-GUUGC-UCGCGGCG---CAGAACG- -5'
33103 3' -55 NC_007497.1 + 31167 0.68 0.535746
Target:  5'- gCCCAUGCGGCG-GC-CCGC-UCUUc- -3'
miRNA:   3'- -GGGUACGUUGCuCGcGGCGcAGAAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.