miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33103 3' -55 NC_007497.1 + 17488 0.66 0.690282
Target:  5'- gCCAUGCGcuugaugauCGAGaCGCCGCccgcgcggaaCUUGCa -3'
miRNA:   3'- gGGUACGUu--------GCUC-GCGGCGca--------GAACG- -5'
33103 3' -55 NC_007497.1 + 21729 0.68 0.579392
Target:  5'- cCUCAUGCucguAACGaAGCGCgGCGgaaUGCg -3'
miRNA:   3'- -GGGUACG----UUGC-UCGCGgCGCagaACG- -5'
33103 3' -55 NC_007497.1 + 29366 0.68 0.579392
Target:  5'- gCCcgGUu-CGAGCGCCaCGUCgcgGCc -3'
miRNA:   3'- gGGuaCGuuGCUCGCGGcGCAGaa-CG- -5'
33103 3' -55 NC_007497.1 + 14293 0.67 0.601516
Target:  5'- gCgCAUGCAcugcgucgccaGCGAGCGgcCCGCGgCUcUGCa -3'
miRNA:   3'- -GgGUACGU-----------UGCUCGC--GGCGCaGA-ACG- -5'
33103 3' -55 NC_007497.1 + 21827 0.67 0.634877
Target:  5'- uCCCAaGCGACGGGCuGCCGa----UGCu -3'
miRNA:   3'- -GGGUaCGUUGCUCG-CGGCgcagaACG- -5'
33103 3' -55 NC_007497.1 + 34826 0.67 0.646005
Target:  5'- gCCUcgGCAcgcuCGAGCucgcccugcgcgGCCGCgGUCUcGCg -3'
miRNA:   3'- -GGGuaCGUu---GCUCG------------CGGCG-CAGAaCG- -5'
33103 3' -55 NC_007497.1 + 40478 0.66 0.67927
Target:  5'- -gUAUGCAGCGA-CGCUGCaacGUCUUcGCc -3'
miRNA:   3'- ggGUACGUUGCUcGCGGCG---CAGAA-CG- -5'
33103 3' -55 NC_007497.1 + 50 0.66 0.67927
Target:  5'- cCCCGU-CAACGcugcauguGCGuuGCGUuUUUGCa -3'
miRNA:   3'- -GGGUAcGUUGCu-------CGCggCGCA-GAACG- -5'
33103 3' -55 NC_007497.1 + 2685 0.66 0.67927
Target:  5'- aCCGUGCGgcGCGAGaucCCG-GUCUUcGCg -3'
miRNA:   3'- gGGUACGU--UGCUCgc-GGCgCAGAA-CG- -5'
33103 3' -55 NC_007497.1 + 3373 0.68 0.579392
Target:  5'- gCCGUGCGGCGcacuGCGC-GCGggcgauaugcCUUGCg -3'
miRNA:   3'- gGGUACGUUGCu---CGCGgCGCa---------GAACG- -5'
33103 3' -55 NC_007497.1 + 26797 0.68 0.568394
Target:  5'- gCCGU-CGuCGAuCGCCGCGUaCUUGCc -3'
miRNA:   3'- gGGUAcGUuGCUcGCGGCGCA-GAACG- -5'
33103 3' -55 NC_007497.1 + 2539 0.68 0.568394
Target:  5'- gCCCggGCGugcGCGccGGCgGCCGCGgcgcaucCUUGCg -3'
miRNA:   3'- -GGGuaCGU---UGC--UCG-CGGCGCa------GAACG- -5'
33103 3' -55 NC_007497.1 + 788 0.8 0.102956
Target:  5'- gCCCAUGCGgcaucgaucacgccgACG-GCGCC-CGUCUUGCu -3'
miRNA:   3'- -GGGUACGU---------------UGCuCGCGGcGCAGAACG- -5'
33103 3' -55 NC_007497.1 + 42355 0.78 0.15123
Target:  5'- gCCAUGUuuCGcAGCGCuCGCGUCUcGCg -3'
miRNA:   3'- gGGUACGuuGC-UCGCG-GCGCAGAaCG- -5'
33103 3' -55 NC_007497.1 + 35812 0.74 0.273168
Target:  5'- gCCGUcGCGuCGAGCggcuGCCGCGUugCUUGCg -3'
miRNA:   3'- gGGUA-CGUuGCUCG----CGGCGCA--GAACG- -5'
33103 3' -55 NC_007497.1 + 35568 0.73 0.3179
Target:  5'- gCCCAUGCcGCGcGCGaUCGCGUCg-GCc -3'
miRNA:   3'- -GGGUACGuUGCuCGC-GGCGCAGaaCG- -5'
33103 3' -55 NC_007497.1 + 34559 0.71 0.407898
Target:  5'- aCCGUGCGcaugagcgagccugcGCGGGCgGCCGCcgUUUGCg -3'
miRNA:   3'- gGGUACGU---------------UGCUCG-CGGCGcaGAACG- -5'
33103 3' -55 NC_007497.1 + 5820 0.7 0.420218
Target:  5'- gCCCGgcaGCuucgucggcugacgAGCGAGCGCgGCGagUUGCu -3'
miRNA:   3'- -GGGUa--CG--------------UUGCUCGCGgCGCagAACG- -5'
33103 3' -55 NC_007497.1 + 41076 0.69 0.493306
Target:  5'- gCCgAUGUuGCGaAGCGCCGCG-CUgauccGCu -3'
miRNA:   3'- -GGgUACGuUGC-UCGCGGCGCaGAa----CG- -5'
33103 3' -55 NC_007497.1 + 3692 0.69 0.514348
Target:  5'- cUCCAgaugGuCGGCGuAGCGCUGCucgGUCUUGUu -3'
miRNA:   3'- -GGGUa---C-GUUGC-UCGCGGCG---CAGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.