miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33103 3' -55 NC_007497.1 + 50 0.66 0.67927
Target:  5'- cCCCGU-CAACGcugcauguGCGuuGCGUuUUUGCa -3'
miRNA:   3'- -GGGUAcGUUGCu-------CGCggCGCA-GAACG- -5'
33103 3' -55 NC_007497.1 + 788 0.8 0.102956
Target:  5'- gCCCAUGCGgcaucgaucacgccgACG-GCGCC-CGUCUUGCu -3'
miRNA:   3'- -GGGUACGU---------------UGCuCGCGGcGCAGAACG- -5'
33103 3' -55 NC_007497.1 + 1691 0.71 0.376769
Target:  5'- gUCCGUGCug-GAGCGCCGCaaagagaUUGCg -3'
miRNA:   3'- -GGGUACGuugCUCGCGGCGcag----AACG- -5'
33103 3' -55 NC_007497.1 + 2539 0.68 0.568394
Target:  5'- gCCCggGCGugcGCGccGGCgGCCGCGgcgcaucCUUGCg -3'
miRNA:   3'- -GGGuaCGU---UGC--UCG-CGGCGCa------GAACG- -5'
33103 3' -55 NC_007497.1 + 2685 0.66 0.67927
Target:  5'- aCCGUGCGgcGCGAGaucCCG-GUCUUcGCg -3'
miRNA:   3'- gGGUACGU--UGCUCgc-GGCgCAGAA-CG- -5'
33103 3' -55 NC_007497.1 + 2978 0.67 0.612621
Target:  5'- ----cGCAuACGGGCGCaugaaGCGUCcgUGCa -3'
miRNA:   3'- ggguaCGU-UGCUCGCGg----CGCAGa-ACG- -5'
33103 3' -55 NC_007497.1 + 3373 0.68 0.579392
Target:  5'- gCCGUGCGGCGcacuGCGC-GCGggcgauaugcCUUGCg -3'
miRNA:   3'- gGGUACGUUGCu---CGCGgCGCa---------GAACG- -5'
33103 3' -55 NC_007497.1 + 3692 0.69 0.514348
Target:  5'- cUCCAgaugGuCGGCGuAGCGCUGCucgGUCUUGUu -3'
miRNA:   3'- -GGGUa---C-GUUGC-UCGCGGCG---CAGAACG- -5'
33103 3' -55 NC_007497.1 + 3767 0.68 0.568393
Target:  5'- gCCcgGCGGCGAcuucuuugaagGCGUCGCGaUCUacaaccugcUGCg -3'
miRNA:   3'- gGGuaCGUUGCU-----------CGCGGCGC-AGA---------ACG- -5'
33103 3' -55 NC_007497.1 + 4031 0.66 0.701236
Target:  5'- gCCGUGCcgucuCGGcCGCCGCGUCc--- -3'
miRNA:   3'- gGGUACGuu---GCUcGCGGCGCAGaacg -5'
33103 3' -55 NC_007497.1 + 4560 1.14 0.000374
Target:  5'- gCCCAUGCAACGAGCGCCGCGUCUUGCg -3'
miRNA:   3'- -GGGUACGUUGCUCGCGGCGCAGAACG- -5'
33103 3' -55 NC_007497.1 + 5820 0.7 0.420218
Target:  5'- gCCCGgcaGCuucgucggcugacgAGCGAGCGCgGCGagUUGCu -3'
miRNA:   3'- -GGGUa--CG--------------UUGCUCGCGgCGCagAACG- -5'
33103 3' -55 NC_007497.1 + 6869 0.67 0.612621
Target:  5'- uUCAUGCGGCcGGCGUucgaCGCGUCgaucGCu -3'
miRNA:   3'- gGGUACGUUGcUCGCG----GCGCAGaa--CG- -5'
33103 3' -55 NC_007497.1 + 8445 0.69 0.482934
Target:  5'- -gCAUGCAGCGAugGUCGCGUCg-GCa -3'
miRNA:   3'- ggGUACGUUGCUcgCGGCGCAGaaCG- -5'
33103 3' -55 NC_007497.1 + 10001 0.69 0.493306
Target:  5'- gCgCA-GCAGCGAcGCGUCGCGUUggagGCc -3'
miRNA:   3'- -GgGUaCGUUGCU-CGCGGCGCAGaa--CG- -5'
33103 3' -55 NC_007497.1 + 10184 0.66 0.668213
Target:  5'- gCCgCA-GCAACGGagcGUGCCGCgGUCgcGCa -3'
miRNA:   3'- -GG-GUaCGUUGCU---CGCGGCG-CAGaaCG- -5'
33103 3' -55 NC_007497.1 + 12625 0.65 0.711036
Target:  5'- aCgCGUcGCAgaugaugGCGAGCGCCGag-UUUGCg -3'
miRNA:   3'- -GgGUA-CGU-------UGCUCGCGGCgcaGAACG- -5'
33103 3' -55 NC_007497.1 + 14058 0.67 0.623745
Target:  5'- uCCCAUGUuggggccagcuGACaGcGCGUCGUGUCgcgGCg -3'
miRNA:   3'- -GGGUACG-----------UUG-CuCGCGGCGCAGaa-CG- -5'
33103 3' -55 NC_007497.1 + 14219 0.66 0.701236
Target:  5'- -aUcgGCGGCGAuGUGCUGCGUUUucaugggcaccUGCa -3'
miRNA:   3'- ggGuaCGUUGCU-CGCGGCGCAGA-----------ACG- -5'
33103 3' -55 NC_007497.1 + 14293 0.67 0.601516
Target:  5'- gCgCAUGCAcugcgucgccaGCGAGCGgcCCGCGgCUcUGCa -3'
miRNA:   3'- -GgGUACGU-----------UGCUCGC--GGCGCaGA-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.