miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33112 3' -56.2 NC_007497.1 + 10875 1.1 0.000445
Target:  5'- cAACGCAGCACCGAACGCUGCGCUACCg -3'
miRNA:   3'- -UUGCGUCGUGGCUUGCGACGCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 40121 0.77 0.115198
Target:  5'- cGCGCAGCggcuucacGCCGuucGCGCccaucUGCGCUGCCg -3'
miRNA:   3'- uUGCGUCG--------UGGCu--UGCG-----ACGCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 29205 0.77 0.118548
Target:  5'- uAGCGCAGCACCGugguACaGCUGuCGC-GCCa -3'
miRNA:   3'- -UUGCGUCGUGGCu---UG-CGAC-GCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 42343 0.76 0.144644
Target:  5'- cAGCGCAGCACCGccauguuucgcAGCGCUcGCGUcucgcgacccgUGCCa -3'
miRNA:   3'- -UUGCGUCGUGGC-----------UUGCGA-CGCG-----------AUGG- -5'
33112 3' -56.2 NC_007497.1 + 30572 0.76 0.148776
Target:  5'- aAACGCAGCacaucgccGCCGAuCGCUGUGCagucgACCu -3'
miRNA:   3'- -UUGCGUCG--------UGGCUuGCGACGCGa----UGG- -5'
33112 3' -56.2 NC_007497.1 + 10128 0.75 0.153014
Target:  5'- cGACGCAgGCGCgCGAGCGCgccgaacgagGCGCcACCg -3'
miRNA:   3'- -UUGCGU-CGUG-GCUUGCGa---------CGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 28961 0.75 0.157362
Target:  5'- uAugGCAGCGuuGGGuagcaugaaggcCGCUGCGCUGCa -3'
miRNA:   3'- -UugCGUCGUggCUU------------GCGACGCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 43372 0.74 0.185862
Target:  5'- cGCGCA--AUCGGACGCUGCGCcacGCCa -3'
miRNA:   3'- uUGCGUcgUGGCUUGCGACGCGa--UGG- -5'
33112 3' -56.2 NC_007497.1 + 2042 0.74 0.191033
Target:  5'- cGGCGCGGUucugAUCGAgccaugcgugacACGCUGCGCaGCCg -3'
miRNA:   3'- -UUGCGUCG----UGGCU------------UGCGACGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 2434 0.74 0.196331
Target:  5'- aGACGCGagcGCugCGAAacauggcggUGCUGCGCUGCg -3'
miRNA:   3'- -UUGCGU---CGugGCUU---------GCGACGCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 23270 0.73 0.21823
Target:  5'- --gGCGGCugCGAcgagcuggucgacACGCUGCugcagGCUGCCa -3'
miRNA:   3'- uugCGUCGugGCU-------------UGCGACG-----CGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 21288 0.73 0.224773
Target:  5'- gGGCGCGGCGgCGGGCGCcgGCGUcgUGCa -3'
miRNA:   3'- -UUGCGUCGUgGCUUGCGa-CGCG--AUGg -5'
33112 3' -56.2 NC_007497.1 + 16128 0.72 0.270385
Target:  5'- gGAUGCGGCgcaugGCCGAgcauggaaacgGCGUUGCGCUGaucCCg -3'
miRNA:   3'- -UUGCGUCG-----UGGCU-----------UGCGACGCGAU---GG- -5'
33112 3' -56.2 NC_007497.1 + 27523 0.72 0.270385
Target:  5'- cGCGCgaGGCuuUCGAGCguGCUGCGCUGCUc -3'
miRNA:   3'- uUGCG--UCGu-GGCUUG--CGACGCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 28339 0.72 0.277478
Target:  5'- cACGCAGCAggauUCGGcguagaggaugAUGCUGCGCUcgACCu -3'
miRNA:   3'- uUGCGUCGU----GGCU-----------UGCGACGCGA--UGG- -5'
33112 3' -56.2 NC_007497.1 + 16436 0.72 0.277478
Target:  5'- gAGCGCAGCaucauccucuacGCCGAAuccUGCUGCGUggACUg -3'
miRNA:   3'- -UUGCGUCG------------UGGCUU---GCGACGCGa-UGG- -5'
33112 3' -56.2 NC_007497.1 + 9999 0.71 0.284719
Target:  5'- uGGCGCAGCAgCGAcGCGUcGCGUUggagGCCg -3'
miRNA:   3'- -UUGCGUCGUgGCU-UGCGaCGCGA----UGG- -5'
33112 3' -56.2 NC_007497.1 + 41069 0.71 0.284719
Target:  5'- cGCGC-GCGCCGAuguugcgaaGCGCcGCGCUGauCCg -3'
miRNA:   3'- uUGCGuCGUGGCU---------UGCGaCGCGAU--GG- -5'
33112 3' -56.2 NC_007497.1 + 28114 0.71 0.299646
Target:  5'- cGACGCGGuCACgCGAGCGgC-GCGCUcCCg -3'
miRNA:   3'- -UUGCGUC-GUG-GCUUGC-GaCGCGAuGG- -5'
33112 3' -56.2 NC_007497.1 + 22822 0.71 0.307334
Target:  5'- gGGCGCAGaCGCCGAACucgaaacgucaGUUGCgGCcGCCa -3'
miRNA:   3'- -UUGCGUC-GUGGCUUG-----------CGACG-CGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.