miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33112 3' -56.2 NC_007497.1 + 791 0.67 0.523318
Target:  5'- cAUGCGGCAUCGAucACGCcgacgGCGC--CCg -3'
miRNA:   3'- uUGCGUCGUGGCU--UGCGa----CGCGauGG- -5'
33112 3' -56.2 NC_007497.1 + 1420 0.7 0.323159
Target:  5'- uGGCGCAGCGuCCGA---UUGCGCgGCCa -3'
miRNA:   3'- -UUGCGUCGU-GGCUugcGACGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 1807 0.67 0.491395
Target:  5'- -uCGCucGCAUCGAgcGCGCUGgGCUucuauacaagGCCg -3'
miRNA:   3'- uuGCGu-CGUGGCU--UGCGACgCGA----------UGG- -5'
33112 3' -56.2 NC_007497.1 + 2042 0.74 0.191033
Target:  5'- cGGCGCGGUucugAUCGAgccaugcgugacACGCUGCGCaGCCg -3'
miRNA:   3'- -UUGCGUCG----UGGCU------------UGCGACGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 2434 0.74 0.196331
Target:  5'- aGACGCGagcGCugCGAAacauggcggUGCUGCGCUGCg -3'
miRNA:   3'- -UUGCGU---CGugGCUU---------GCGACGCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 2561 0.66 0.552709
Target:  5'- -cCGCGGCGcauccuugcgauuuCCGAGCGCguagaUGCG-UGCCg -3'
miRNA:   3'- uuGCGUCGU--------------GGCUUGCG-----ACGCgAUGG- -5'
33112 3' -56.2 NC_007497.1 + 2832 0.69 0.37422
Target:  5'- uGCGcCAGCACCGcgUGCaUGCuuCUGCCg -3'
miRNA:   3'- uUGC-GUCGUGGCuuGCG-ACGc-GAUGG- -5'
33112 3' -56.2 NC_007497.1 + 4206 0.66 0.560412
Target:  5'- uGGCGC-GCGCCGGguauucccgguccauGCGCcgugaUGCGCUcaaaGCCc -3'
miRNA:   3'- -UUGCGuCGUGGCU---------------UGCG-----ACGCGA----UGG- -5'
33112 3' -56.2 NC_007497.1 + 4288 0.66 0.565933
Target:  5'- aAACGCcaCGCCGGGCGCUGgcgaagaCGUUGCa -3'
miRNA:   3'- -UUGCGucGUGGCUUGCGAC-------GCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 4651 0.66 0.545037
Target:  5'- uGACGCuGUgucgACCGAGCGCgucCGUUACg -3'
miRNA:   3'- -UUGCGuCG----UGGCUUGCGac-GCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 4652 0.66 0.556006
Target:  5'- --gGCAGCGCagauGGGCGCgaacgGCGUgaaGCCg -3'
miRNA:   3'- uugCGUCGUGg---CUUGCGa----CGCGa--UGG- -5'
33112 3' -56.2 NC_007497.1 + 5382 0.66 0.600431
Target:  5'- uAGCGgGGCAgCCGGcgACGCUGgcggGCUAUCc -3'
miRNA:   3'- -UUGCgUCGU-GGCU--UGCGACg---CGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 5810 0.67 0.523318
Target:  5'- aGACGguGC-CCGAGCGgucgGCGC-ACUg -3'
miRNA:   3'- -UUGCguCGuGGCUUGCga--CGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 6268 0.68 0.430476
Target:  5'- -cCGUGGCGCC-AGCGaCU-CGCUACCa -3'
miRNA:   3'- uuGCGUCGUGGcUUGC-GAcGCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 8345 0.66 0.58926
Target:  5'- gGACGCuugccgAGCugCGcGCGCagaUGUcgGCUGCCg -3'
miRNA:   3'- -UUGCG------UCGugGCuUGCG---ACG--CGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 8573 0.66 0.556006
Target:  5'- gAGCGCGGC-CCGAAguuCGUgGCGgaGCUa -3'
miRNA:   3'- -UUGCGUCGuGGCUU---GCGaCGCgaUGG- -5'
33112 3' -56.2 NC_007497.1 + 8975 0.66 0.545037
Target:  5'- cAACGCGGaGCCGcucGACGCgacgGCGgaGCUg -3'
miRNA:   3'- -UUGCGUCgUGGC---UUGCGa---CGCgaUGG- -5'
33112 3' -56.2 NC_007497.1 + 9308 0.68 0.440326
Target:  5'- cGACGC-GCugCgGAAUGCcgGCGCUaguACCg -3'
miRNA:   3'- -UUGCGuCGugG-CUUGCGa-CGCGA---UGG- -5'
33112 3' -56.2 NC_007497.1 + 9721 0.67 0.520088
Target:  5'- cGGCGCAG-GCCGAgcuugccggcaugcGCGCgaUGCGCgaaaGCCu -3'
miRNA:   3'- -UUGCGUCgUGGCU--------------UGCG--ACGCGa---UGG- -5'
33112 3' -56.2 NC_007497.1 + 9999 0.71 0.284719
Target:  5'- uGGCGCAGCAgCGAcGCGUcGCGUUggagGCCg -3'
miRNA:   3'- -UUGCGUCGUgGCU-UGCGaCGCGA----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.