miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33112 3' -56.2 NC_007497.1 + 38170 0.69 0.392413
Target:  5'- cGugGC-GCGCCuGAGCGCcuuagucgacUGCGCUuucGCCa -3'
miRNA:   3'- -UugCGuCGUGG-CUUGCG----------ACGCGA---UGG- -5'
33112 3' -56.2 NC_007497.1 + 33434 0.7 0.331297
Target:  5'- cAGCGCAGgcgcauugaCGCCGAuacGCGCgaccUGCGCgGCCg -3'
miRNA:   3'- -UUGCGUC---------GUGGCU---UGCG----ACGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 13564 0.7 0.356607
Target:  5'- cAGCGCAGCAaggaugcgUUGGACGUUGCGgaACg -3'
miRNA:   3'- -UUGCGUCGU--------GGCUUGCGACGCgaUGg -5'
33112 3' -56.2 NC_007497.1 + 27399 0.7 0.356607
Target:  5'- gAGCGCGaccguGUACCGcgucuuACGCU-CGCUGCCg -3'
miRNA:   3'- -UUGCGU-----CGUGGCu-----UGCGAcGCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 36992 0.7 0.361829
Target:  5'- --gGCGGCGCCGGAgGCggaacaagcuucgGCGC-GCCg -3'
miRNA:   3'- uugCGUCGUGGCUUgCGa------------CGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 23866 0.7 0.36534
Target:  5'- cGCGCGGCACUcauccGGCGUgaaGCGCUgGCCg -3'
miRNA:   3'- uUGCGUCGUGGc----UUGCGa--CGCGA-UGG- -5'
33112 3' -56.2 NC_007497.1 + 2832 0.69 0.37422
Target:  5'- uGCGcCAGCACCGcgUGCaUGCuuCUGCCg -3'
miRNA:   3'- uUGC-GUCGUGGCuuGCG-ACGc-GAUGG- -5'
33112 3' -56.2 NC_007497.1 + 33973 0.69 0.37422
Target:  5'- --aGCAGCACCccgUGCUGCggcguccaucGCUGCCa -3'
miRNA:   3'- uugCGUCGUGGcuuGCGACG----------CGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 25351 0.69 0.383244
Target:  5'- cGCGCAGCauGCCGuuuccgucauaGACGCgcaCGCUACUg -3'
miRNA:   3'- uUGCGUCG--UGGC-----------UUGCGac-GCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 1420 0.7 0.323159
Target:  5'- uGGCGCAGCGuCCGA---UUGCGCgGCCa -3'
miRNA:   3'- -UUGCGUCGU-GGCUugcGACGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 22822 0.71 0.307334
Target:  5'- gGGCGCAGaCGCCGAACucgaaacgucaGUUGCgGCcGCCa -3'
miRNA:   3'- -UUGCGUC-GUGGCUUG-----------CGACG-CGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 41069 0.71 0.284719
Target:  5'- cGCGC-GCGCCGAuguugcgaaGCGCcGCGCUGauCCg -3'
miRNA:   3'- uUGCGuCGUGGCU---------UGCGaCGCGAU--GG- -5'
33112 3' -56.2 NC_007497.1 + 40121 0.77 0.115198
Target:  5'- cGCGCAGCggcuucacGCCGuucGCGCccaucUGCGCUGCCg -3'
miRNA:   3'- uUGCGUCG--------UGGCu--UGCG-----ACGCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 29205 0.77 0.118548
Target:  5'- uAGCGCAGCACCGugguACaGCUGuCGC-GCCa -3'
miRNA:   3'- -UUGCGUCGUGGCu---UG-CGAC-GCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 42343 0.76 0.144644
Target:  5'- cAGCGCAGCACCGccauguuucgcAGCGCUcGCGUcucgcgacccgUGCCa -3'
miRNA:   3'- -UUGCGUCGUGGC-----------UUGCGA-CGCG-----------AUGG- -5'
33112 3' -56.2 NC_007497.1 + 30572 0.76 0.148776
Target:  5'- aAACGCAGCacaucgccGCCGAuCGCUGUGCagucgACCu -3'
miRNA:   3'- -UUGCGUCG--------UGGCUuGCGACGCGa----UGG- -5'
33112 3' -56.2 NC_007497.1 + 2042 0.74 0.191033
Target:  5'- cGGCGCGGUucugAUCGAgccaugcgugacACGCUGCGCaGCCg -3'
miRNA:   3'- -UUGCGUCG----UGGCU------------UGCGACGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 23270 0.73 0.21823
Target:  5'- --gGCGGCugCGAcgagcuggucgacACGCUGCugcagGCUGCCa -3'
miRNA:   3'- uugCGUCGugGCU-------------UGCGACG-----CGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 16128 0.72 0.270385
Target:  5'- gGAUGCGGCgcaugGCCGAgcauggaaacgGCGUUGCGCUGaucCCg -3'
miRNA:   3'- -UUGCGUCG-----UGGCU-----------UGCGACGCGAU---GG- -5'
33112 3' -56.2 NC_007497.1 + 16436 0.72 0.277478
Target:  5'- gAGCGCAGCaucauccucuacGCCGAAuccUGCUGCGUggACUg -3'
miRNA:   3'- -UUGCGUCG------------UGGCUU---GCGACGCGa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.