miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33115 3' -61.3 NC_007497.1 + 9268 0.84 0.018412
Target:  5'- cGCuCGCCGAGGACGGCAagcucaCCGUCGAGa -3'
miRNA:   3'- aCG-GUGGCUCCUGCCGUg-----GGCGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 4188 0.67 0.314632
Target:  5'- cGCuCAUCGAagcgucGAUGGCGCgCGCCGGGu -3'
miRNA:   3'- aCG-GUGGCUc-----CUGCCGUGgGCGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 18047 0.67 0.285444
Target:  5'- gUGCCGCCaucGGuACaGGCA-CCGCCGAGc -3'
miRNA:   3'- -ACGGUGGcu-CC-UG-CCGUgGGCGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 39984 0.68 0.27167
Target:  5'- cGCagaACgGAGGuGCGGCAUgaCGCCGAGc -3'
miRNA:   3'- aCGg--UGgCUCC-UGCCGUGg-GCGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 42554 0.69 0.23355
Target:  5'- cGUgGCCGAGGGCucgaaguaccuGGCGgCCUGCCGu- -3'
miRNA:   3'- aCGgUGGCUCCUG-----------CCGU-GGGCGGUuc -5'
33115 3' -61.3 NC_007497.1 + 40627 0.69 0.23355
Target:  5'- uUGCCGCagcucGGGGCGGCAUgaCCGUCGAc -3'
miRNA:   3'- -ACGGUGgc---UCCUGCCGUG--GGCGGUUc -5'
33115 3' -61.3 NC_007497.1 + 10200 0.66 0.370998
Target:  5'- gUGCCGCgGucgcgcaaacGGCGGcCGCCCGCgCAGGc -3'
miRNA:   3'- -ACGGUGgCuc--------CUGCC-GUGGGCG-GUUC- -5'
33115 3' -61.3 NC_007497.1 + 27578 0.66 0.346022
Target:  5'- cUGCCugCGcGGGCGGCugCggggcgGCCGc- -3'
miRNA:   3'- -ACGGugGCuCCUGCCGugGg-----CGGUuc -5'
33115 3' -61.3 NC_007497.1 + 17705 0.67 0.302693
Target:  5'- cGCUGCCGGcgcgguugucguguuGGACaaGGCGCCCGCa--- -3'
miRNA:   3'- aCGGUGGCU---------------CCUG--CCGUGGGCGguuc -5'
33115 3' -61.3 NC_007497.1 + 39250 0.68 0.264985
Target:  5'- gGCCGgCGaAGGcgguccugAUGGCGCUCGCCGAc -3'
miRNA:   3'- aCGGUgGC-UCC--------UGCCGUGGGCGGUUc -5'
33115 3' -61.3 NC_007497.1 + 11379 0.71 0.161907
Target:  5'- gGcCCAUCGGacgcgggcGGGCGGCGCCCGuuCCGAGc -3'
miRNA:   3'- aC-GGUGGCU--------CCUGCCGUGGGC--GGUUC- -5'
33115 3' -61.3 NC_007497.1 + 30000 0.66 0.354212
Target:  5'- uUGCCGCCGAGcaguCGGCgacgaGCaaGCCAGa -3'
miRNA:   3'- -ACGGUGGCUCcu--GCCG-----UGggCGGUUc -5'
33115 3' -61.3 NC_007497.1 + 15807 0.7 0.175371
Target:  5'- gGCCGCCGAaaccugagccaGGAcgaucucaCGGCACCCGUaGGGg -3'
miRNA:   3'- aCGGUGGCU-----------CCU--------GCCGUGGGCGgUUC- -5'
33115 3' -61.3 NC_007497.1 + 10582 0.67 0.292535
Target:  5'- cGUCACugaCGAGGaucagGCGGCACUCGaCCGAu -3'
miRNA:   3'- aCGGUG---GCUCC-----UGCCGUGGGC-GGUUc -5'
33115 3' -61.3 NC_007497.1 + 21845 0.66 0.362538
Target:  5'- gGCCGCaugCGGGGGCGGCgacgacagcgGCCCugacucGUCGGGg -3'
miRNA:   3'- aCGGUG---GCUCCUGCCG----------UGGG------CGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 9707 0.69 0.216234
Target:  5'- gGCgGCgGAGGucGCGGCGCagGCCGAGc -3'
miRNA:   3'- aCGgUGgCUCC--UGCCGUGggCGGUUC- -5'
33115 3' -61.3 NC_007497.1 + 42809 0.66 0.337968
Target:  5'- gGCUuUCGAGGAaugGGCGCCCGUg--- -3'
miRNA:   3'- aCGGuGGCUCCUg--CCGUGGGCGguuc -5'
33115 3' -61.3 NC_007497.1 + 13887 0.66 0.330052
Target:  5'- gGCCGCCGcagGGGACGccGCAUgggUCGCCGcAGg -3'
miRNA:   3'- aCGGUGGC---UCCUGC--CGUG---GGCGGU-UC- -5'
33115 3' -61.3 NC_007497.1 + 44297 0.67 0.322273
Target:  5'- uUGCCGCCGuuGGcgaucaaccGCGGCGgugCCGCCGGa -3'
miRNA:   3'- -ACGGUGGCu-CC---------UGCCGUg--GGCGGUUc -5'
33115 3' -61.3 NC_007497.1 + 13614 0.67 0.307129
Target:  5'- gGCCACUGAGGAaGaGCgGgCCGCCGc- -3'
miRNA:   3'- aCGGUGGCUCCUgC-CG-UgGGCGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.