miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33120 5' -55.3 NC_007497.1 + 14744 1.12 0.000487
Target:  5'- uGGUUCGUGCGCACGAAGCGCACCGACg -3'
miRNA:   3'- -CCAAGCACGCGUGCUUCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 39677 0.79 0.118878
Target:  5'- uGUUgGUGCGCGCGGAacGCGCuuacCCGACg -3'
miRNA:   3'- cCAAgCACGCGUGCUU--CGCGu---GGCUG- -5'
33120 5' -55.3 NC_007497.1 + 28508 0.79 0.118878
Target:  5'- --aUCgGUGCGCcgcuguugaACGGAGCGCGCCGGCc -3'
miRNA:   3'- ccaAG-CACGCG---------UGCUUCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 42338 0.78 0.144758
Target:  5'- uGGcgCGUcGcCGCGCGAacgcccagcGGCGCACCGGCa -3'
miRNA:   3'- -CCaaGCA-C-GCGUGCU---------UCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 18433 0.76 0.175687
Target:  5'- cGGcUCGgcagGCGaCACGcAGCGCACCGAg -3'
miRNA:   3'- -CCaAGCa---CGC-GUGCuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 29369 0.75 0.23
Target:  5'- cGGUUCGaGCGcCACGucGCG-GCCGACg -3'
miRNA:   3'- -CCAAGCaCGC-GUGCuuCGCgUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 6665 0.74 0.242436
Target:  5'- cGGgaCGagGCGCGCGcucGCGCACCGAa -3'
miRNA:   3'- -CCaaGCa-CGCGUGCuu-CGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 10130 0.74 0.248862
Target:  5'- ---aCGcagGCGCGCG-AGCGCGCCGAa -3'
miRNA:   3'- ccaaGCa--CGCGUGCuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 12824 0.72 0.328199
Target:  5'- gGGUUCG-GCGauggguaCACGcAGCGCgcaGCCGACg -3'
miRNA:   3'- -CCAAGCaCGC-------GUGCuUCGCG---UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 27510 0.72 0.329008
Target:  5'- uGGUguugaCGUGCGCGCGAggcuuucgAGCGUGCUGcGCu -3'
miRNA:   3'- -CCAa----GCACGCGUGCU--------UCGCGUGGC-UG- -5'
33120 5' -55.3 NC_007497.1 + 43094 0.72 0.34548
Target:  5'- cGGgagUGcUGCGCACGAAgGCGUACUGGa -3'
miRNA:   3'- -CCaa-GC-ACGCGUGCUU-CGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 12688 0.71 0.380169
Target:  5'- --aUCGUGUGCAacuAGUGCGCCGGg -3'
miRNA:   3'- ccaAGCACGCGUgcuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 4712 0.71 0.380169
Target:  5'- -aUUCaagGCGCACguGAAGCGCGgCGACg -3'
miRNA:   3'- ccAAGca-CGCGUG--CUUCGCGUgGCUG- -5'
33120 5' -55.3 NC_007497.1 + 31483 0.71 0.388289
Target:  5'- -cUUCGUagcacGCGCcagcuuuGCGAAGCGCAUCGAg -3'
miRNA:   3'- ccAAGCA-----CGCG-------UGCUUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 13532 0.7 0.417112
Target:  5'- cGGUgggCGUGUccuGCugGGcGGCGCuuCCGACg -3'
miRNA:   3'- -CCAa--GCACG---CGugCU-UCGCGu-GGCUG- -5'
33120 5' -55.3 NC_007497.1 + 34658 0.7 0.426684
Target:  5'- cGUUCG-GCGCGCuc-GCGCGCCuGCg -3'
miRNA:   3'- cCAAGCaCGCGUGcuuCGCGUGGcUG- -5'
33120 5' -55.3 NC_007497.1 + 30366 0.7 0.426684
Target:  5'- ---gCGUGCGCcgGCGAAacaccuuCGCACCGACc -3'
miRNA:   3'- ccaaGCACGCG--UGCUUc------GCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 26214 0.7 0.426684
Target:  5'- ---aCGUGUcCACGAGGCGCGCCc-- -3'
miRNA:   3'- ccaaGCACGcGUGCUUCGCGUGGcug -5'
33120 5' -55.3 NC_007497.1 + 29152 0.7 0.445225
Target:  5'- ---aCGUGCGUugGAcggugggAGCGCGCuCGAa -3'
miRNA:   3'- ccaaGCACGCGugCU-------UCGCGUG-GCUg -5'
33120 5' -55.3 NC_007497.1 + 34560 0.7 0.446213
Target:  5'- ---cCGUGCGCAUGAgcgAGCcuGCGCgGGCg -3'
miRNA:   3'- ccaaGCACGCGUGCU---UCG--CGUGgCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.