miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33120 5' -55.3 NC_007497.1 + 14744 1.12 0.000487
Target:  5'- uGGUUCGUGCGCACGAAGCGCACCGACg -3'
miRNA:   3'- -CCAAGCACGCGUGCUUCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 41066 0.66 0.693987
Target:  5'- -cUUCGcGCGCgccgauguuGCGAAGCGCcgcGCUGAUc -3'
miRNA:   3'- ccAAGCaCGCG---------UGCUUCGCG---UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 36905 0.66 0.693987
Target:  5'- gGGUUCagaauUGCgGCGCGGAuGCGC-CCGGu -3'
miRNA:   3'- -CCAAGc----ACG-CGUGCUU-CGCGuGGCUg -5'
33120 5' -55.3 NC_007497.1 + 23861 0.66 0.683009
Target:  5'- aGGcgCGcGCgGCACucauccggcguGAAGCGCugGCCGGCg -3'
miRNA:   3'- -CCaaGCaCG-CGUG-----------CUUCGCG--UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 3374 0.66 0.683009
Target:  5'- ---cCGUGCgGCGCacuGCGCGCgGGCg -3'
miRNA:   3'- ccaaGCACG-CGUGcuuCGCGUGgCUG- -5'
33120 5' -55.3 NC_007497.1 + 4208 0.68 0.528851
Target:  5'- cGGcgCcaUGCGCACGAAGCcgaGCAUCGGu -3'
miRNA:   3'- -CCaaGc-ACGCGUGCUUCG---CGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 27874 0.69 0.497098
Target:  5'- ---aCGUG-GUACG-AGCGCACCGGg -3'
miRNA:   3'- ccaaGCACgCGUGCuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 38119 0.69 0.456163
Target:  5'- -uUUCG-GUGCGCGAGcGCGCGCCu-- -3'
miRNA:   3'- ccAAGCaCGCGUGCUU-CGCGUGGcug -5'
33120 5' -55.3 NC_007497.1 + 34560 0.7 0.446213
Target:  5'- ---cCGUGCGCAUGAgcgAGCcuGCGCgGGCg -3'
miRNA:   3'- ccaaGCACGCGUGCU---UCG--CGUGgCUG- -5'
33120 5' -55.3 NC_007497.1 + 34658 0.7 0.426684
Target:  5'- cGUUCG-GCGCGCuc-GCGCGCCuGCg -3'
miRNA:   3'- cCAAGCaCGCGUGcuuCGCGUGGcUG- -5'
33120 5' -55.3 NC_007497.1 + 30366 0.7 0.426684
Target:  5'- ---gCGUGCGCcgGCGAAacaccuuCGCACCGACc -3'
miRNA:   3'- ccaaGCACGCG--UGCUUc------GCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 26214 0.7 0.426684
Target:  5'- ---aCGUGUcCACGAGGCGCGCCc-- -3'
miRNA:   3'- ccaaGCACGcGUGCUUCGCGUGGcug -5'
33120 5' -55.3 NC_007497.1 + 12688 0.71 0.380169
Target:  5'- --aUCGUGUGCAacuAGUGCGCCGGg -3'
miRNA:   3'- ccaAGCACGCGUgcuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 29369 0.75 0.23
Target:  5'- cGGUUCGaGCGcCACGucGCG-GCCGACg -3'
miRNA:   3'- -CCAAGCaCGC-GUGCuuCGCgUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 10130 0.74 0.248862
Target:  5'- ---aCGcagGCGCGCG-AGCGCGCCGAa -3'
miRNA:   3'- ccaaGCa--CGCGUGCuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 6665 0.74 0.242436
Target:  5'- cGGgaCGagGCGCGCGcucGCGCACCGAa -3'
miRNA:   3'- -CCaaGCa-CGCGUGCuu-CGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 18433 0.76 0.175687
Target:  5'- cGGcUCGgcagGCGaCACGcAGCGCACCGAg -3'
miRNA:   3'- -CCaAGCa---CGC-GUGCuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 42338 0.78 0.144758
Target:  5'- uGGcgCGUcGcCGCGCGAacgcccagcGGCGCACCGGCa -3'
miRNA:   3'- -CCaaGCA-C-GCGUGCU---------UCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 39677 0.79 0.118878
Target:  5'- uGUUgGUGCGCGCGGAacGCGCuuacCCGACg -3'
miRNA:   3'- cCAAgCACGCGUGCUU--CGCGu---GGCUG- -5'
33120 5' -55.3 NC_007497.1 + 7774 0.66 0.679706
Target:  5'- cGUUCGggucagcgGCGCGcCGAAGCuuguuccgccuccgGCGCCGcCg -3'
miRNA:   3'- cCAAGCa-------CGCGU-GCUUCG--------------CGUGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.