miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33120 5' -55.3 NC_007497.1 + 1659 0.68 0.518178
Target:  5'- uGGcUCGcauggGCGCACGcuuGGGCGCACCc-- -3'
miRNA:   3'- -CCaAGCa----CGCGUGC---UUCGCGUGGcug -5'
33120 5' -55.3 NC_007497.1 + 2983 0.66 0.671982
Target:  5'- ---aCGgGCGCAUGAAGCGU-CCGuGCa -3'
miRNA:   3'- ccaaGCaCGCGUGCUUCGCGuGGC-UG- -5'
33120 5' -55.3 NC_007497.1 + 3374 0.66 0.683009
Target:  5'- ---cCGUGCgGCGCacuGCGCGCgGGCg -3'
miRNA:   3'- ccaaGCACG-CGUGcuuCGCGUGgCUG- -5'
33120 5' -55.3 NC_007497.1 + 3669 0.68 0.518178
Target:  5'- --aUCG-GCGacaaCugGGAGgGCACCGGCg -3'
miRNA:   3'- ccaAGCaCGC----GugCUUCgCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 4208 0.68 0.528851
Target:  5'- cGGcgCcaUGCGCACGAAGCcgaGCAUCGGu -3'
miRNA:   3'- -CCaaGc-ACGCGUGCUUCG---CGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 4712 0.71 0.380169
Target:  5'- -aUUCaagGCGCACguGAAGCGCGgCGACg -3'
miRNA:   3'- ccAAGca-CGCGUG--CUUCGCGUgGCUG- -5'
33120 5' -55.3 NC_007497.1 + 5514 0.69 0.476413
Target:  5'- gGGUUCGcgUGCuGCGCGAucCGUACaCGGCg -3'
miRNA:   3'- -CCAAGC--ACG-CGUGCUucGCGUG-GCUG- -5'
33120 5' -55.3 NC_007497.1 + 6665 0.74 0.242436
Target:  5'- cGGgaCGagGCGCGCGcucGCGCACCGAa -3'
miRNA:   3'- -CCaaGCa-CGCGUGCuu-CGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 7774 0.66 0.679706
Target:  5'- cGUUCGggucagcgGCGCGcCGAAGCuuguuccgccuccgGCGCCGcCg -3'
miRNA:   3'- cCAAGCa-------CGCGU-GCUUCG--------------CGUGGCuG- -5'
33120 5' -55.3 NC_007497.1 + 9416 0.69 0.486703
Target:  5'- uGG-UCGaGCGaACGAAGCG-ACCGGCg -3'
miRNA:   3'- -CCaAGCaCGCgUGCUUCGCgUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 9972 0.68 0.518178
Target:  5'- --cUCGaGCGUcCGAGGCGuCGCUGGCg -3'
miRNA:   3'- ccaAGCaCGCGuGCUUCGC-GUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 10130 0.74 0.248862
Target:  5'- ---aCGcagGCGCGCG-AGCGCGCCGAa -3'
miRNA:   3'- ccaaGCa--CGCGUGCuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 11452 0.67 0.583273
Target:  5'- cGGaUCGcgcagcUGCGCGuCGAGGCggugGCgACCGACa -3'
miRNA:   3'- -CCaAGC------ACGCGU-GCUUCG----CG-UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 12168 0.68 0.528851
Target:  5'- cGGUUCGcUGCGCG---AGCGgCAUUGGCg -3'
miRNA:   3'- -CCAAGC-ACGCGUgcuUCGC-GUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 12688 0.71 0.380169
Target:  5'- --aUCGUGUGCAacuAGUGCGCCGGg -3'
miRNA:   3'- ccaAGCACGCGUgcuUCGCGUGGCUg -5'
33120 5' -55.3 NC_007497.1 + 12824 0.72 0.328199
Target:  5'- gGGUUCG-GCGauggguaCACGcAGCGCgcaGCCGACg -3'
miRNA:   3'- -CCAAGCaCGC-------GUGCuUCGCG---UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 13532 0.7 0.417112
Target:  5'- cGGUgggCGUGUccuGCugGGcGGCGCuuCCGACg -3'
miRNA:   3'- -CCAa--GCACG---CGugCU-UCGCGu-GGCUG- -5'
33120 5' -55.3 NC_007497.1 + 14744 1.12 0.000487
Target:  5'- uGGUUCGUGCGCACGAAGCGCACCGACg -3'
miRNA:   3'- -CCAAGCACGCGUGCUUCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 15119 0.67 0.616486
Target:  5'- --aUCGUacCGUAUGcGAGCGCGCUGGCa -3'
miRNA:   3'- ccaAGCAc-GCGUGC-UUCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 16286 0.66 0.671982
Target:  5'- ---cCGcGCGCGCGAAG-GUGCuCGACa -3'
miRNA:   3'- ccaaGCaCGCGUGCUUCgCGUG-GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.