Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33125 | 3' | -54.5 | NC_007497.1 | + | 8475 | 0.66 | 0.744248 |
Target: 5'- -cGAUCaGCCgcaUUUUGCG-CGGCGGCUCa -3' miRNA: 3'- ccUUAG-CGG---GAAGUGCuGCUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 21299 | 0.66 | 0.741077 |
Target: 5'- --uAUCGCgCCUUCuggagggugACGAUggaaccgcgcgccgGACGGCUCa -3' miRNA: 3'- ccuUAGCG-GGAAG---------UGCUG--------------CUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 15164 | 0.66 | 0.733639 |
Target: 5'- --uGUCGCUCggcgUUCA-GGCgGACGGCUCg -3' miRNA: 3'- ccuUAGCGGG----AAGUgCUG-CUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 21426 | 0.66 | 0.733639 |
Target: 5'- uGGAAaggCGCCggcagcaUUCAC-ACGGCGcGCUCg -3' miRNA: 3'- -CCUUa--GCGGg------AAGUGcUGCUGC-CGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 9850 | 0.66 | 0.722926 |
Target: 5'- -cGGUCGCaCaggUCGCGACGGCccGCUCg -3' miRNA: 3'- ccUUAGCG-Gga-AGUGCUGCUGc-CGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 3107 | 0.66 | 0.722926 |
Target: 5'- cGAAUCcCCaCUUCcCGACucgaGCGGCUCu -3' miRNA: 3'- cCUUAGcGG-GAAGuGCUGc---UGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 7201 | 0.66 | 0.712121 |
Target: 5'- uGGAAUCGaCCggCAUGuucucuguCGGCGGCgUCa -3' miRNA: 3'- -CCUUAGCgGGaaGUGCu-------GCUGCCG-AG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 10154 | 0.66 | 0.701236 |
Target: 5'- cGAggCGCCac-CGCGGCGAccgcCGGCUUg -3' miRNA: 3'- cCUuaGCGGgaaGUGCUGCU----GCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 6908 | 0.66 | 0.690282 |
Target: 5'- uGGAAUCGCCCUgccgaucccggUCGCccagGGCGAcaucgagugcCGGC-Cg -3' miRNA: 3'- -CCUUAGCGGGA-----------AGUG----CUGCU----------GCCGaG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 9639 | 0.66 | 0.690282 |
Target: 5'- cGGcgCGCCggcCGCGACGuCGGCUg -3' miRNA: 3'- cCUuaGCGGgaaGUGCUGCuGCCGAg -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 1963 | 0.66 | 0.690282 |
Target: 5'- cGGAA-CGCCgCaUCGCGGCGGCgucggGGCa- -3' miRNA: 3'- -CCUUaGCGG-GaAGUGCUGCUG-----CCGag -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 19621 | 0.67 | 0.67264 |
Target: 5'- uGGAcugaGCCCgagaaagagauCGACGACGGCUa -3' miRNA: 3'- -CCUuag-CGGGaagu-------GCUGCUGCCGAg -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 5097 | 0.67 | 0.646005 |
Target: 5'- aGGAAggcaaagCGUUCcUCGCuGGCGACGGCa- -3' miRNA: 3'- -CCUUa------GCGGGaAGUG-CUGCUGCCGag -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 40913 | 0.67 | 0.634876 |
Target: 5'- aGGAuccGUCGCCggccaUCGCGAUGACcgaGGCUg -3' miRNA: 3'- -CCU---UAGCGGga---AGUGCUGCUG---CCGAg -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 36636 | 0.67 | 0.634876 |
Target: 5'- --uGUCGCCgaaUUCGCGACGccaccccuggGCGGuCUCg -3' miRNA: 3'- ccuUAGCGGg--AAGUGCUGC----------UGCC-GAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 9202 | 0.68 | 0.612621 |
Target: 5'- aGGAAUUGCCCggCGuggcCGACGcgaucgcgcGCGGCa- -3' miRNA: 3'- -CCUUAGCGGGaaGU----GCUGC---------UGCCGag -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 44504 | 0.68 | 0.608176 |
Target: 5'- uGGGugGUCGCCCgcugaaguggugcUCGCGuguGCGGCUCg -3' miRNA: 3'- -CCU--UAGCGGGa------------AGUGCugcUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 1573 | 0.68 | 0.579392 |
Target: 5'- aGGuGAUCGCCgCUgguauCGAUGGCGGCg- -3' miRNA: 3'- -CC-UUAGCGG-GAagu--GCUGCUGCCGag -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 34686 | 0.68 | 0.579392 |
Target: 5'- -cGAUCGCUaCUUCGCGcuCGGCGGC-Cg -3' miRNA: 3'- ccUUAGCGG-GAAGUGCu-GCUGCCGaG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 40738 | 0.68 | 0.568393 |
Target: 5'- ---cUUGUCCaUCAUGGCGGCGGC-Cg -3' miRNA: 3'- ccuuAGCGGGaAGUGCUGCUGCCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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