Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33132 | 3' | -64.4 | NC_007497.1 | + | 23624 | 1.1 | 0.000095 |
Target: 5'- aGCACGCGGCCGCCGGCCGUGACCCACu -3' miRNA: 3'- -CGUGCGCCGGCGGCCGGCACUGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 42243 | 0.78 | 0.032204 |
Target: 5'- uGCGcCGCGGCCGCCGGCgCGcacGCCCGg -3' miRNA: 3'- -CGU-GCGCCGGCGGCCG-GCac-UGGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 28531 | 0.77 | 0.035029 |
Target: 5'- aGCGCGcCGGCCGUCGGCguaGUGgaagugagggcGCCCGCg -3' miRNA: 3'- -CGUGC-GCCGGCGGCCGg--CAC-----------UGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 36090 | 0.77 | 0.040289 |
Target: 5'- cGCAcCGCGuugaaauaGCCGCCGGCCGUcgacgccaGCCCACg -3' miRNA: 3'- -CGU-GCGC--------CGGCGGCCGGCAc-------UGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 6633 | 0.76 | 0.047626 |
Target: 5'- gGCGCGCcacGGUCGCCGGCgcgaaCGUGAUCCGg -3' miRNA: 3'- -CGUGCG---CCGGCGGCCG-----GCACUGGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 26168 | 0.75 | 0.054571 |
Target: 5'- uGCACGCcgGGaCCGUCGGCCGgauaccaUGGCCCGa -3' miRNA: 3'- -CGUGCG--CC-GGCGGCCGGC-------ACUGGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 36173 | 0.74 | 0.062841 |
Target: 5'- gGCGCGuCGGCCGcCCGGUCGUGuGgCUGCg -3' miRNA: 3'- -CGUGC-GCCGGC-GGCCGGCAC-UgGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 3924 | 0.73 | 0.072117 |
Target: 5'- uGCACGCGuGCCGUcccgacguucuuCGuGCCGgcgucGACCCGCa -3' miRNA: 3'- -CGUGCGC-CGGCG------------GC-CGGCa----CUGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 32451 | 0.73 | 0.076185 |
Target: 5'- -gACGUGGCCGCCGGUCGcaagaugGaACCCGu -3' miRNA: 3'- cgUGCGCCGGCGGCCGGCa------C-UGGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 21638 | 0.73 | 0.076185 |
Target: 5'- aGCugGCGGaauaCGCUGaCCGUG-CCCGCa -3' miRNA: 3'- -CGugCGCCg---GCGGCcGGCACuGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 27234 | 0.72 | 0.09222 |
Target: 5'- gGCGCGCGGCU-CCGGC--UGGCCCGg -3' miRNA: 3'- -CGUGCGCCGGcGGCCGgcACUGGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 13638 | 0.72 | 0.097361 |
Target: 5'- cGCAUG-GGCCGCCgcacgGGCCGcagggGACgCCGCa -3' miRNA: 3'- -CGUGCgCCGGCGG-----CCGGCa----CUG-GGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 34011 | 0.72 | 0.097361 |
Target: 5'- uGCGCGCGcccCUGUCGGCCGcGGCCCc- -3' miRNA: 3'- -CGUGCGCc--GGCGGCCGGCaCUGGGug -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 32480 | 0.72 | 0.097361 |
Target: 5'- nGUACGCGuuGCCGCCGGCgGcGGCCgCGa -3' miRNA: 3'- -CGUGCGC--CGGCGGCCGgCaCUGG-GUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 984 | 0.71 | 0.102772 |
Target: 5'- aGUACGCGGCCGaCGauCCGUGAgCCAg -3' miRNA: 3'- -CGUGCGCCGGCgGCc-GGCACUgGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 4951 | 0.71 | 0.107593 |
Target: 5'- cCACGUGGCCGCCcaguCCGUcuuucgucccuucuGGCCCGCu -3' miRNA: 3'- cGUGCGCCGGCGGcc--GGCA--------------CUGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 15249 | 0.71 | 0.111422 |
Target: 5'- cGCAuccCGCGGaCGCCGGCCGa-GCgCCGCg -3' miRNA: 3'- -CGU---GCGCCgGCGGCCGGCacUG-GGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 9842 | 0.71 | 0.117562 |
Target: 5'- aGCAagUGCGGUCGCacaGGUCGcgacGGCCCGCu -3' miRNA: 3'- -CGU--GCGCCGGCGg--CCGGCa---CUGGGUG- -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 40831 | 0.69 | 0.145398 |
Target: 5'- uGCA-GCGGCCGCCauGUCGUGAcgguuCCCAa -3' miRNA: 3'- -CGUgCGCCGGCGGc-CGGCACU-----GGGUg -5' |
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33132 | 3' | -64.4 | NC_007497.1 | + | 21047 | 0.69 | 0.145398 |
Target: 5'- -aGCGCGGCCGCCGGaaggggaaggGUGAaauCCCGa -3' miRNA: 3'- cgUGCGCCGGCGGCCgg--------CACU---GGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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