miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33132 3' -64.4 NC_007497.1 + 9634 0.67 0.20359
Target:  5'- aCACcCGGCgCGCCGGCCGcGACgUCGg -3'
miRNA:   3'- cGUGcGCCG-GCGGCCGGCaCUG-GGUg -5'
33132 3' -64.4 NC_007497.1 + 40831 0.69 0.145398
Target:  5'- uGCA-GCGGCCGCCauGUCGUGAcgguuCCCAa -3'
miRNA:   3'- -CGUgCGCCGGCGGc-CGGCACU-----GGGUg -5'
33132 3' -64.4 NC_007497.1 + 1145 0.69 0.149274
Target:  5'- uCGCGCGGaucaUGCCGGCC-UG-CCCAg -3'
miRNA:   3'- cGUGCGCCg---GCGGCCGGcACuGGGUg -5'
33132 3' -64.4 NC_007497.1 + 35966 0.69 0.149274
Target:  5'- cGC-CGCGGCCG-CGGCuuccgCGUauccgcgaagcGACCCGCg -3'
miRNA:   3'- -CGuGCGCCGGCgGCCG-----GCA-----------CUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 13803 0.69 0.157309
Target:  5'- cGCAgG-GGCCGCCgcaugGGCCGcacggGACgCCGCa -3'
miRNA:   3'- -CGUgCgCCGGCGG-----CCGGCa----CUG-GGUG- -5'
33132 3' -64.4 NC_007497.1 + 44643 0.68 0.169654
Target:  5'- gGCGCGaccCGGCCGCCgaugcugucgcggGGCUGUaGCCUGCc -3'
miRNA:   3'- -CGUGC---GCCGGCGG-------------CCGGCAcUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 2544 0.68 0.170095
Target:  5'- gGCGUGCGcGCCGgCGGCCGcGGCgCAUc -3'
miRNA:   3'- -CGUGCGC-CGGCgGCCGGCaCUGgGUG- -5'
33132 3' -64.4 NC_007497.1 + 27581 0.68 0.198476
Target:  5'- aCGCGuCGGCCGCCGaCUG-GAUCaCGCa -3'
miRNA:   3'- cGUGC-GCCGGCGGCcGGCaCUGG-GUG- -5'
33132 3' -64.4 NC_007497.1 + 13704 0.68 0.198476
Target:  5'- cGCAUG-GGUCGCCgcacgGGCCGcagggGACgCCGCa -3'
miRNA:   3'- -CGUGCgCCGGCGG-----CCGGCa----CUG-GGUG- -5'
33132 3' -64.4 NC_007497.1 + 21047 0.69 0.145398
Target:  5'- -aGCGCGGCCGCCGGaaggggaaggGUGAaauCCCGa -3'
miRNA:   3'- cgUGCGCCGGCGGCCgg--------CACU---GGGUg -5'
33132 3' -64.4 NC_007497.1 + 15249 0.71 0.111422
Target:  5'- cGCAuccCGCGGaCGCCGGCCGa-GCgCCGCg -3'
miRNA:   3'- -CGU---GCGCCgGCGGCCGGCacUG-GGUG- -5'
33132 3' -64.4 NC_007497.1 + 4951 0.71 0.107593
Target:  5'- cCACGUGGCCGCCcaguCCGUcuuucgucccuucuGGCCCGCu -3'
miRNA:   3'- cGUGCGCCGGCGGcc--GGCA--------------CUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 36090 0.77 0.040289
Target:  5'- cGCAcCGCGuugaaauaGCCGCCGGCCGUcgacgccaGCCCACg -3'
miRNA:   3'- -CGU-GCGC--------CGGCGGCCGGCAc-------UGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 26168 0.75 0.054571
Target:  5'- uGCACGCcgGGaCCGUCGGCCGgauaccaUGGCCCGa -3'
miRNA:   3'- -CGUGCG--CC-GGCGGCCGGC-------ACUGGGUg -5'
33132 3' -64.4 NC_007497.1 + 3924 0.73 0.072117
Target:  5'- uGCACGCGuGCCGUcccgacguucuuCGuGCCGgcgucGACCCGCa -3'
miRNA:   3'- -CGUGCGC-CGGCG------------GC-CGGCa----CUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 32451 0.73 0.076185
Target:  5'- -gACGUGGCCGCCGGUCGcaagaugGaACCCGu -3'
miRNA:   3'- cgUGCGCCGGCGGCCGGCa------C-UGGGUg -5'
33132 3' -64.4 NC_007497.1 + 32480 0.72 0.097361
Target:  5'- nGUACGCGuuGCCGCCGGCgGcGGCCgCGa -3'
miRNA:   3'- -CGUGCGC--CGGCGGCCGgCaCUGG-GUg -5'
33132 3' -64.4 NC_007497.1 + 34011 0.72 0.097361
Target:  5'- uGCGCGCGcccCUGUCGGCCGcGGCCCc- -3'
miRNA:   3'- -CGUGCGCc--GGCGGCCGGCaCUGGGug -5'
33132 3' -64.4 NC_007497.1 + 13638 0.72 0.097361
Target:  5'- cGCAUG-GGCCGCCgcacgGGCCGcagggGACgCCGCa -3'
miRNA:   3'- -CGUGCgCCGGCGG-----CCGGCa----CUG-GGUG- -5'
33132 3' -64.4 NC_007497.1 + 984 0.71 0.102772
Target:  5'- aGUACGCGGCCGaCGauCCGUGAgCCAg -3'
miRNA:   3'- -CGUGCGCCGGCgGCc-GGCACUgGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.