miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33132 3' -64.4 NC_007497.1 + 984 0.71 0.102772
Target:  5'- aGUACGCGGCCGaCGauCCGUGAgCCAg -3'
miRNA:   3'- -CGUGCGCCGGCgGCc-GGCACUgGGUg -5'
33132 3' -64.4 NC_007497.1 + 1145 0.69 0.149274
Target:  5'- uCGCGCGGaucaUGCCGGCC-UG-CCCAg -3'
miRNA:   3'- cGUGCGCCg---GCGGCCGGcACuGGGUg -5'
33132 3' -64.4 NC_007497.1 + 1188 0.67 0.230898
Target:  5'- -aGCGaCGaGCCGCCGGCCgGUGugUUc- -3'
miRNA:   3'- cgUGC-GC-CGGCGGCCGG-CACugGGug -5'
33132 3' -64.4 NC_007497.1 + 1819 0.66 0.248725
Target:  5'- aGCGCGCugGGCUucuauacaagGCCGG-CGUcGACCCGg -3'
miRNA:   3'- -CGUGCG--CCGG----------CGGCCgGCA-CUGGGUg -5'
33132 3' -64.4 NC_007497.1 + 2544 0.68 0.170095
Target:  5'- gGCGUGCGcGCCGgCGGCCGcGGCgCAUc -3'
miRNA:   3'- -CGUGCGC-CGGCgGCCGGCaCUGgGUG- -5'
33132 3' -64.4 NC_007497.1 + 3924 0.73 0.072117
Target:  5'- uGCACGCGuGCCGUcccgacguucuuCGuGCCGgcgucGACCCGCa -3'
miRNA:   3'- -CGUGCGC-CGGCG------------GC-CGGCa----CUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 4290 0.67 0.208818
Target:  5'- aGCACG-GGCgGCUGGCUuuuGUG-CCCGg -3'
miRNA:   3'- -CGUGCgCCGgCGGCCGG---CACuGGGUg -5'
33132 3' -64.4 NC_007497.1 + 4951 0.71 0.107593
Target:  5'- cCACGUGGCCGCCcaguCCGUcuuucgucccuucuGGCCCGCu -3'
miRNA:   3'- cGUGCGCCGGCGGcc--GGCA--------------CUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 6245 0.66 0.242659
Target:  5'- aGCAuCGCGcCCgacauGCCGaGCCGUGGCgCCAg -3'
miRNA:   3'- -CGU-GCGCcGG-----CGGC-CGGCACUG-GGUg -5'
33132 3' -64.4 NC_007497.1 + 6633 0.76 0.047626
Target:  5'- gGCGCGCcacGGUCGCCGGCgcgaaCGUGAUCCGg -3'
miRNA:   3'- -CGUGCG---CCGGCGGCCG-----GCACUGGGUg -5'
33132 3' -64.4 NC_007497.1 + 9634 0.67 0.20359
Target:  5'- aCACcCGGCgCGCCGGCCGcGACgUCGg -3'
miRNA:   3'- cGUGcGCCG-GCGGCCGGCaCUG-GGUg -5'
33132 3' -64.4 NC_007497.1 + 9842 0.71 0.117562
Target:  5'- aGCAagUGCGGUCGCacaGGUCGcgacGGCCCGCu -3'
miRNA:   3'- -CGU--GCGCCGGCGg--CCGGCa---CUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 9905 0.68 0.174559
Target:  5'- -gACGCGaaucgccgggacGCCGUaugCGGCCGUGAUCgCGCg -3'
miRNA:   3'- cgUGCGC------------CGGCG---GCCGGCACUGG-GUG- -5'
33132 3' -64.4 NC_007497.1 + 10201 0.68 0.188584
Target:  5'- uGC-CGCGGUCGCgcaaaCGGCgGccGCCCGCg -3'
miRNA:   3'- -CGuGCGCCGGCG-----GCCGgCacUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 11668 0.67 0.214161
Target:  5'- uCGCGCGGCCcggaaccgGCaCGGCCGggaguagccgGGCgCGCg -3'
miRNA:   3'- cGUGCGCCGG--------CG-GCCGGCa---------CUGgGUG- -5'
33132 3' -64.4 NC_007497.1 + 12300 0.69 0.153244
Target:  5'- gGCGuCGCGGCCGCCG-CCGgcGGCaaCGCg -3'
miRNA:   3'- -CGU-GCGCCGGCGGCcGGCa-CUGg-GUG- -5'
33132 3' -64.4 NC_007497.1 + 12846 0.66 0.267674
Target:  5'- aGCGCGCaGCCGaCGGCC-UGAauaaCCGg -3'
miRNA:   3'- -CGUGCGcCGGCgGCCGGcACUg---GGUg -5'
33132 3' -64.4 NC_007497.1 + 13638 0.72 0.097361
Target:  5'- cGCAUG-GGCCGCCgcacgGGCCGcagggGACgCCGCa -3'
miRNA:   3'- -CGUGCgCCGGCGG-----CCGGCa----CUG-GGUG- -5'
33132 3' -64.4 NC_007497.1 + 13704 0.68 0.198476
Target:  5'- cGCAUG-GGUCGCCgcacgGGCCGcagggGACgCCGCa -3'
miRNA:   3'- -CGUGCgCCGGCGG-----CCGGCa----CUG-GGUG- -5'
33132 3' -64.4 NC_007497.1 + 13803 0.69 0.157309
Target:  5'- cGCAgG-GGCCGCCgcaugGGCCGcacggGACgCCGCa -3'
miRNA:   3'- -CGUgCgCCGGCGG-----CCGGCa----CUG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.