miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33149 5' -54.5 NC_007497.1 + 19593 0.66 0.721102
Target:  5'- -gUCGCCGccgauaUGUCgGGCGGUgAGCcguucuGGGCa -3'
miRNA:   3'- caAGUGGC------ACAG-CCGCUAgUCG------CUCG- -5'
33149 5' -54.5 NC_007497.1 + 6373 0.66 0.71132
Target:  5'- -gUCAuuuCCGgagcgguacgaagcUCGGCGAUC-GCGAGCa -3'
miRNA:   3'- caAGU---GGCac------------AGCCGCUAGuCGCUCG- -5'
33149 5' -54.5 NC_007497.1 + 442 0.66 0.710228
Target:  5'- -gUCAUCGUcgCGacacGCGAcgCAGCGAGCg -3'
miRNA:   3'- caAGUGGCAcaGC----CGCUa-GUCGCUCG- -5'
33149 5' -54.5 NC_007497.1 + 39265 0.66 0.710228
Target:  5'- cUUCGCCGUGUaCGGauCGcgCAGCacGCg -3'
miRNA:   3'- cAAGUGGCACA-GCC--GCuaGUCGcuCG- -5'
33149 5' -54.5 NC_007497.1 + 14945 0.66 0.699276
Target:  5'- -cUCAUCGUG-CGGacagCGGCGGGUg -3'
miRNA:   3'- caAGUGGCACaGCCgcuaGUCGCUCG- -5'
33149 5' -54.5 NC_007497.1 + 36028 0.66 0.688255
Target:  5'- -gUCGCCGUcGUCGGCa--CAGCuuGCc -3'
miRNA:   3'- caAGUGGCA-CAGCCGcuaGUCGcuCG- -5'
33149 5' -54.5 NC_007497.1 + 18814 0.66 0.67718
Target:  5'- -gUCGCUGcaGUCGGCGAUUGcCGAGg -3'
miRNA:   3'- caAGUGGCa-CAGCCGCUAGUcGCUCg -5'
33149 5' -54.5 NC_007497.1 + 28619 0.67 0.654906
Target:  5'- -gUCGCCGUcUCGGUgcgugccggGAUCAGCGcaacGCc -3'
miRNA:   3'- caAGUGGCAcAGCCG---------CUAGUCGCu---CG- -5'
33149 5' -54.5 NC_007497.1 + 21299 0.67 0.643732
Target:  5'- cGggCGCCGgcGUCGuGCaccuGAUCAGCGcGCg -3'
miRNA:   3'- -CaaGUGGCa-CAGC-CG----CUAGUCGCuCG- -5'
33149 5' -54.5 NC_007497.1 + 41054 0.67 0.643732
Target:  5'- cGUUCACCGUGacuUCGcGCGcgCcgauguuGCGaAGCg -3'
miRNA:   3'- -CAAGUGGCAC---AGC-CGCuaGu------CGC-UCG- -5'
33149 5' -54.5 NC_007497.1 + 3372 0.67 0.643732
Target:  5'- ---aGCCGUG-CGGCGcacugCGcGCGGGCg -3'
miRNA:   3'- caagUGGCACaGCCGCua---GU-CGCUCG- -5'
33149 5' -54.5 NC_007497.1 + 7205 0.68 0.610184
Target:  5'- -aUCgACCGgcauguucucUGUCGGCGGcgUCAGCGAc- -3'
miRNA:   3'- caAG-UGGC----------ACAGCCGCU--AGUCGCUcg -5'
33149 5' -54.5 NC_007497.1 + 8408 0.68 0.599028
Target:  5'- --aCGCgGaGUCGcCGAUCAGCGAGg -3'
miRNA:   3'- caaGUGgCaCAGCcGCUAGUCGCUCg -5'
33149 5' -54.5 NC_007497.1 + 17800 0.68 0.554783
Target:  5'- --gCGCCGUgaaGUCGGUGGaCGGCGAcacGCu -3'
miRNA:   3'- caaGUGGCA---CAGCCGCUaGUCGCU---CG- -5'
33149 5' -54.5 NC_007497.1 + 44296 0.68 0.554783
Target:  5'- -cUUGCCGccGUUGGCGAUCAaccGCG-GCg -3'
miRNA:   3'- caAGUGGCa-CAGCCGCUAGU---CGCuCG- -5'
33149 5' -54.5 NC_007497.1 + 25445 0.68 0.554783
Target:  5'- ---gGCCGUGUCGGCGcccccgaucuccAUCGGU-AGCc -3'
miRNA:   3'- caagUGGCACAGCCGC------------UAGUCGcUCG- -5'
33149 5' -54.5 NC_007497.1 + 43689 0.69 0.533008
Target:  5'- cUUCACCGUG-CaGUGAUCAucGCGcGCg -3'
miRNA:   3'- cAAGUGGCACaGcCGCUAGU--CGCuCG- -5'
33149 5' -54.5 NC_007497.1 + 9988 0.69 0.511547
Target:  5'- -gUCGCUGgcGUUGGCGcagCAGCGAcGCg -3'
miRNA:   3'- caAGUGGCa-CAGCCGCua-GUCGCU-CG- -5'
33149 5' -54.5 NC_007497.1 + 14181 0.7 0.494639
Target:  5'- -gUCACCGUaucgagcuauuugagGUCGacugcacaGCGAUCGGCG-GCg -3'
miRNA:   3'- caAGUGGCA---------------CAGC--------CGCUAGUCGCuCG- -5'
33149 5' -54.5 NC_007497.1 + 23458 0.7 0.480057
Target:  5'- --cCGCCuucaUGUCGGCGAUCucGCGcGCg -3'
miRNA:   3'- caaGUGGc---ACAGCCGCUAGu-CGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.