miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33157 3' -58.2 NC_007497.1 + 40532 0.66 0.523453
Target:  5'- aCGCACACGccgcucAUCGCgugaugCUCgGCGGCCa -3'
miRNA:   3'- aGUGUGUGCu-----UAGCG------GGGaCGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 34605 0.66 0.523453
Target:  5'- cCGCgGCACGcucCGUUgCUGCGGCCa -3'
miRNA:   3'- aGUG-UGUGCuuaGCGGgGACGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 5610 0.66 0.513007
Target:  5'- -uGCGCGCGAugaagGUCGCCgCCaGCgaguaagcgucgGGCCGu -3'
miRNA:   3'- agUGUGUGCU-----UAGCGG-GGaCG------------CCGGC- -5'
33157 3' -58.2 NC_007497.1 + 5563 0.66 0.513007
Target:  5'- cUACACgACGAAgCGCgUCggcgGCGGCCu -3'
miRNA:   3'- aGUGUG-UGCUUaGCGgGGa---CGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 37860 0.66 0.502648
Target:  5'- -gGCACuCGAuGUCGCCCUggGCGaCCGg -3'
miRNA:   3'- agUGUGuGCU-UAGCGGGGa-CGCcGGC- -5'
33157 3' -58.2 NC_007497.1 + 17699 0.66 0.502648
Target:  5'- aUCGCGCGacgGAAUCGCCCUUcacgacGaCGGCUc -3'
miRNA:   3'- -AGUGUGUg--CUUAGCGGGGA------C-GCCGGc -5'
33157 3' -58.2 NC_007497.1 + 5803 0.66 0.502648
Target:  5'- ---aGCugGAAgacggUGCCCgaGCGGUCGg -3'
miRNA:   3'- agugUGugCUUa----GCGGGgaCGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 40598 0.66 0.496476
Target:  5'- gCGCGCGCcaucgacgcuucgauGAG-CGCcauugCCUUGCGGCCGg -3'
miRNA:   3'- aGUGUGUG---------------CUUaGCG-----GGGACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 30901 0.66 0.492381
Target:  5'- aCcCAUGCGg--CGuCCCCUGCGGCgGc -3'
miRNA:   3'- aGuGUGUGCuuaGC-GGGGACGCCGgC- -5'
33157 3' -58.2 NC_007497.1 + 43707 0.66 0.482212
Target:  5'- aUCGCGCGCGc--UGCCCCUcGUGaccuGCCGu -3'
miRNA:   3'- -AGUGUGUGCuuaGCGGGGA-CGC----CGGC- -5'
33157 3' -58.2 NC_007497.1 + 1824 0.67 0.462186
Target:  5'- aUC-CGCGCGAuccgauagacgGUCGUUaCCaGCGGCCGg -3'
miRNA:   3'- -AGuGUGUGCU-----------UAGCGG-GGaCGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 30990 0.67 0.432993
Target:  5'- gCcCAUGCGGcg-GCCCCUGCGGCg- -3'
miRNA:   3'- aGuGUGUGCUuagCGGGGACGCCGgc -5'
33157 3' -58.2 NC_007497.1 + 41977 0.67 0.423503
Target:  5'- gCGCAUgguGCGGAUauggGCCUCggggaGCGGCCGa -3'
miRNA:   3'- aGUGUG---UGCUUAg---CGGGGa----CGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 30945 0.68 0.414139
Target:  5'- gCcCAUGCGGcgC-CCCCUGCGGCgGc -3'
miRNA:   3'- aGuGUGUGCUuaGcGGGGACGCCGgC- -5'
33157 3' -58.2 NC_007497.1 + 32464 0.68 0.404903
Target:  5'- gUCGCAagauggaacccgUACGcGUUGCCgCCggcgGCGGCCGc -3'
miRNA:   3'- -AGUGU------------GUGCuUAGCGG-GGa---CGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 8802 0.68 0.395798
Target:  5'- -uGCGCGCGggUCGCUUC-GCGGauaCGc -3'
miRNA:   3'- agUGUGUGCuuAGCGGGGaCGCCg--GC- -5'
33157 3' -58.2 NC_007497.1 + 39287 0.68 0.377989
Target:  5'- -aGCACGCGAA---CCCCgaUGCGGUCGa -3'
miRNA:   3'- agUGUGUGCUUagcGGGG--ACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 37877 0.69 0.360727
Target:  5'- cCGCGCgaucuccguACGAAUUGCgCCCU-CGGCCu -3'
miRNA:   3'- aGUGUG---------UGCUUAGCG-GGGAcGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 28774 0.69 0.344022
Target:  5'- cUCGCGCGCGGua-GCCCaa--GGCCGg -3'
miRNA:   3'- -AGUGUGUGCUuagCGGGgacgCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 42344 0.69 0.344022
Target:  5'- gUCGcCGCGCGAA-CGCCCa-GCGGCg- -3'
miRNA:   3'- -AGU-GUGUGCUUaGCGGGgaCGCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.