miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33160 3' -57.1 NC_007497.1 + 806 0.66 0.561323
Target:  5'- -aCGCCGACgGCGCCcGUCuuGCUGUu -3'
miRNA:   3'- gcGCGGUUG-UGCGGuUAGcgCGACGu -5'
33160 3' -57.1 NC_007497.1 + 33408 0.66 0.561323
Target:  5'- cCGCGCCGACuucagGCGCCcccacUCaGUGCUGa- -3'
miRNA:   3'- -GCGCGGUUG-----UGCGGuu---AG-CGCGACgu -5'
33160 3' -57.1 NC_007497.1 + 41465 0.66 0.560231
Target:  5'- cCGCGCaaCAGCGCGCCcucguugaauuugAAUUGcCGCUGa- -3'
miRNA:   3'- -GCGCG--GUUGUGCGG-------------UUAGC-GCGACgu -5'
33160 3' -57.1 NC_007497.1 + 36317 0.66 0.550431
Target:  5'- cCGCGCaaAAUGCgGCUGAUCGUcgGCUGCGg -3'
miRNA:   3'- -GCGCGg-UUGUG-CGGUUAGCG--CGACGU- -5'
33160 3' -57.1 NC_007497.1 + 42764 0.66 0.550431
Target:  5'- cCGCGCCggUACGCCGAagcaggucaaguUCGaCG-UGUg -3'
miRNA:   3'- -GCGCGGuuGUGCGGUU------------AGC-GCgACGu -5'
33160 3' -57.1 NC_007497.1 + 36697 0.66 0.539605
Target:  5'- cCGCGCguACGCgaGCUugugCGCGuCUGCAc -3'
miRNA:   3'- -GCGCGguUGUG--CGGuua-GCGC-GACGU- -5'
33160 3' -57.1 NC_007497.1 + 15532 0.66 0.536371
Target:  5'- aGCGCUGACAUgGCCuuucugaagaucugGAUCGgCGCgGCAg -3'
miRNA:   3'- gCGCGGUUGUG-CGG--------------UUAGC-GCGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 41458 0.66 0.528852
Target:  5'- aGCGCC-GCACGCCGAUgGacg-GCGa -3'
miRNA:   3'- gCGCGGuUGUGCGGUUAgCgcgaCGU- -5'
33160 3' -57.1 NC_007497.1 + 31934 0.66 0.518179
Target:  5'- aGCGuCCGGuuauuCAgGCCGucggcugCGCGCUGCGu -3'
miRNA:   3'- gCGC-GGUU-----GUgCGGUua-----GCGCGACGU- -5'
33160 3' -57.1 NC_007497.1 + 32183 0.66 0.514993
Target:  5'- aCGCGUCGGCcguucCGCCcucGAUCGUuaucggaauauucaGCUGCAg -3'
miRNA:   3'- -GCGCGGUUGu----GCGG---UUAGCG--------------CGACGU- -5'
33160 3' -57.1 NC_007497.1 + 39127 0.66 0.507592
Target:  5'- gGCGUCAACgACGCCccucaaaccacAAUCGCGacgGCc -3'
miRNA:   3'- gCGCGGUUG-UGCGG-----------UUAGCGCga-CGu -5'
33160 3' -57.1 NC_007497.1 + 23061 0.66 0.507592
Target:  5'- cCGCGCUucguuacgAGCAUgagGCCGAUUGUuccGCUGCGu -3'
miRNA:   3'- -GCGCGG--------UUGUG---CGGUUAGCG---CGACGU- -5'
33160 3' -57.1 NC_007497.1 + 20909 0.66 0.507592
Target:  5'- gCGCGCCGGCcagcgcuucACGCCGGaugagugcCGCGC-GCGc -3'
miRNA:   3'- -GCGCGGUUG---------UGCGGUUa-------GCGCGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 17704 0.66 0.507592
Target:  5'- cCGCuGCCGGCGCGgUuGUCGUGUUGg- -3'
miRNA:   3'- -GCG-CGGUUGUGCgGuUAGCGCGACgu -5'
33160 3' -57.1 NC_007497.1 + 6880 0.66 0.507592
Target:  5'- gGCGuUCGACGCGUCGAUCGCucaggccgaggGC-GCAa -3'
miRNA:   3'- gCGC-GGUUGUGCGGUUAGCG-----------CGaCGU- -5'
33160 3' -57.1 NC_007497.1 + 14631 0.67 0.497099
Target:  5'- -uCGUCGGCACguGCCAGUgGCGCUaccGCGg -3'
miRNA:   3'- gcGCGGUUGUG--CGGUUAgCGCGA---CGU- -5'
33160 3' -57.1 NC_007497.1 + 34579 0.67 0.497099
Target:  5'- uGCGCgGGCGgcCGCCGuUUGCGCgaccgcgGCAc -3'
miRNA:   3'- gCGCGgUUGU--GCGGUuAGCGCGa------CGU- -5'
33160 3' -57.1 NC_007497.1 + 34808 0.67 0.486704
Target:  5'- uGCGCCA--ACGCCAG-CGaCGCcucgGCAc -3'
miRNA:   3'- gCGCGGUugUGCGGUUaGC-GCGa---CGU- -5'
33160 3' -57.1 NC_007497.1 + 27119 0.67 0.486704
Target:  5'- gGcCGCCGAUGCGCCGccccgccUUGCGCggaucgGCAa -3'
miRNA:   3'- gC-GCGGUUGUGCGGUu------AGCGCGa-----CGU- -5'
33160 3' -57.1 NC_007497.1 + 34104 0.67 0.486704
Target:  5'- cCGCGaCgAACACGUCGacgaGUCGCGCaaGCu -3'
miRNA:   3'- -GCGC-GgUUGUGCGGU----UAGCGCGa-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.