miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33161 3' -54.2 NC_007497.1 + 1069 0.66 0.715602
Target:  5'- cACGAGCACGgcaggucaCGAgGGGcagcgCGCGCGAu -3'
miRNA:   3'- cUGCUUGUGCa-------GCUgCUCa----GCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 11974 0.66 0.715602
Target:  5'- -uUGAGCGCGaUUGGCGuGUUGgCGCGAg -3'
miRNA:   3'- cuGCUUGUGC-AGCUGCuCAGC-GCGUU- -5'
33161 3' -54.2 NC_007497.1 + 34186 0.66 0.715602
Target:  5'- aGACGAGCua---G-UGAGUCGCGCAAa -3'
miRNA:   3'- -CUGCUUGugcagCuGCUCAGCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 8781 0.66 0.715602
Target:  5'- aACGGuACGCG-CGAuCGAGgcugCGCGCGGg -3'
miRNA:   3'- cUGCU-UGUGCaGCU-GCUCa---GCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 17767 0.66 0.715602
Target:  5'- cGGCGAuccugccgucGgGCGUCGcAC-AGUCGCGCGc -3'
miRNA:   3'- -CUGCU----------UgUGCAGC-UGcUCAGCGCGUu -5'
33161 3' -54.2 NC_007497.1 + 23278 0.66 0.704616
Target:  5'- cGACGAGCugGUCGACacgcUGCuGCAGg -3'
miRNA:   3'- -CUGCUUGugCAGCUGcucaGCG-CGUU- -5'
33161 3' -54.2 NC_007497.1 + 29388 0.66 0.704616
Target:  5'- aGGCGAGCaggGCGUUGuCGuuUUGCGCAc -3'
miRNA:   3'- -CUGCUUG---UGCAGCuGCucAGCGCGUu -5'
33161 3' -54.2 NC_007497.1 + 4561 0.66 0.693556
Target:  5'- cGACGuccGACGCGUUGGCGAaggucgacaagGUCaGCGCu- -3'
miRNA:   3'- -CUGC---UUGUGCAGCUGCU-----------CAG-CGCGuu -5'
33161 3' -54.2 NC_007497.1 + 10673 0.67 0.671261
Target:  5'- cGCGAGCuugcgcgacuCGUCGACGuguucGUCGCgGCGAc -3'
miRNA:   3'- cUGCUUGu---------GCAGCUGCu----CAGCG-CGUU- -5'
33161 3' -54.2 NC_007497.1 + 39841 0.67 0.671261
Target:  5'- aGACGGACugGgCGGCcacGUgGCGCAAc -3'
miRNA:   3'- -CUGCUUGugCaGCUGcu-CAgCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 44564 0.67 0.670142
Target:  5'- ---uGGCACGaUCGGCGAucacaucGUCGCGCAc -3'
miRNA:   3'- cugcUUGUGC-AGCUGCU-------CAGCGCGUu -5'
33161 3' -54.2 NC_007497.1 + 41222 0.67 0.660051
Target:  5'- -cCGGccGCACGUCGAauUGAGcCGCGCc- -3'
miRNA:   3'- cuGCU--UGUGCAGCU--GCUCaGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 40640 0.67 0.66005
Target:  5'- gGGCGGcaugAC-CGUCGACGAGUgC-CGCGAg -3'
miRNA:   3'- -CUGCU----UGuGCAGCUGCUCA-GcGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 23214 0.67 0.66005
Target:  5'- -uCGAGCGCcaagacgccGUCGACGAGcUGCGCc- -3'
miRNA:   3'- cuGCUUGUG---------CAGCUGCUCaGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 43989 0.67 0.648812
Target:  5'- aGACGGGCGcCGUCGGCGuGaUCGaugcCGCAu -3'
miRNA:   3'- -CUGCUUGU-GCAGCUGCuC-AGC----GCGUu -5'
33161 3' -54.2 NC_007497.1 + 39401 0.67 0.637558
Target:  5'- uACGGACACG--GGCGAG-CGCGCc- -3'
miRNA:   3'- cUGCUUGUGCagCUGCUCaGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 6879 0.67 0.637558
Target:  5'- cGGCGuucGACGCGUCGAucgcucaggcCGAGg-GCGCAAu -3'
miRNA:   3'- -CUGC---UUGUGCAGCU----------GCUCagCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 25960 0.67 0.626299
Target:  5'- cGGCGAGCAaggUGUCGAUGGcGUCG-GCGg -3'
miRNA:   3'- -CUGCUUGU---GCAGCUGCU-CAGCgCGUu -5'
33161 3' -54.2 NC_007497.1 + 36167 0.68 0.615045
Target:  5'- gGGCgGGGCGCGUCGGCcgcccGGUCGUGUg- -3'
miRNA:   3'- -CUG-CUUGUGCAGCUGc----UCAGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 27095 0.68 0.603806
Target:  5'- gGGCGAuuccguCGCG-CGAUGAGcUCGCGCc- -3'
miRNA:   3'- -CUGCUu-----GUGCaGCUGCUC-AGCGCGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.