miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33162 5' -59.4 NC_007497.1 + 34780 1.09 0.000361
Target:  5'- gGCGGCCUCCAACGCGACGCGUCGCUGc -3'
miRNA:   3'- -CGCCGGAGGUUGCGCUGCGCAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 9953 0.75 0.126256
Target:  5'- cGCGGCCgcgcagggcgagcUCgAGCGUccGAgGCGUCGCUGg -3'
miRNA:   3'- -CGCCGG-------------AGgUUGCG--CUgCGCAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 10099 0.74 0.145087
Target:  5'- cGCGGCCgCCgAGCGCGAaguaGCGaUCGCg- -3'
miRNA:   3'- -CGCCGGaGG-UUGCGCUg---CGC-AGCGac -5'
33162 5' -59.4 NC_007497.1 + 34585 0.73 0.161616
Target:  5'- gGCGGCCgCCGuuuGCGCGAcCGCGgcaCGCUc -3'
miRNA:   3'- -CGCCGGaGGU---UGCGCU-GCGCa--GCGAc -5'
33162 5' -59.4 NC_007497.1 + 8701 0.73 0.173713
Target:  5'- gGCGGCUauUUCAACGCGGUGCGUgaugguggucgugcCGCUGa -3'
miRNA:   3'- -CGCCGG--AGGUUGCGCUGCGCA--------------GCGAC- -5'
33162 5' -59.4 NC_007497.1 + 16674 0.71 0.233435
Target:  5'- aGCGcGCCgCUcGCGUGAcCGCGUCGCg- -3'
miRNA:   3'- -CGC-CGGaGGuUGCGCU-GCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 6187 0.71 0.23948
Target:  5'- aGCGGCCUCC-GCGaGACucagcuuguggGUGUCGUUGu -3'
miRNA:   3'- -CGCCGGAGGuUGCgCUG-----------CGCAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 16681 0.7 0.245655
Target:  5'- cGCGgcGCCUuuGACGgcaaGACGaCGUCGCUGu -3'
miRNA:   3'- -CGC--CGGAggUUGCg---CUGC-GCAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 14066 0.7 0.251961
Target:  5'- uGgGGCCagcugaCAGCGCGuCGUGUCGCg- -3'
miRNA:   3'- -CgCCGGag----GUUGCGCuGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 33050 0.7 0.264972
Target:  5'- cGCGGCCagcUCUcGCGCGACcucUCGCUGa -3'
miRNA:   3'- -CGCCGG---AGGuUGCGCUGcgcAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 42248 0.7 0.264972
Target:  5'- cGCGGCCgCCGGCGCGcACGCccgggcagaaGUgGCa- -3'
miRNA:   3'- -CGCCGGaGGUUGCGC-UGCG----------CAgCGac -5'
33162 5' -59.4 NC_007497.1 + 9993 0.7 0.264972
Target:  5'- -nGGCgUUggcgCAGCaGCGACGCGUCGCg- -3'
miRNA:   3'- cgCCGgAG----GUUG-CGCUGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 25779 0.7 0.271679
Target:  5'- aGCGGCUUCgAGaGCGGCGCGaaguUCGgUGa -3'
miRNA:   3'- -CGCCGGAGgUUgCGCUGCGC----AGCgAC- -5'
33162 5' -59.4 NC_007497.1 + 22852 0.7 0.278523
Target:  5'- uGCGGCCgCCAuCGUucGCGCG-CGCUGc -3'
miRNA:   3'- -CGCCGGaGGUuGCGc-UGCGCaGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 10774 0.69 0.285502
Target:  5'- aGgGGCCgcggCCGACaGgGGCGCGcgcaCGCUGg -3'
miRNA:   3'- -CgCCGGa---GGUUG-CgCUGCGCa---GCGAC- -5'
33162 5' -59.4 NC_007497.1 + 26966 0.69 0.285502
Target:  5'- aGCGGUCgaCCAACGUaaGCGUGUCGCc- -3'
miRNA:   3'- -CGCCGGa-GGUUGCGc-UGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 38612 0.69 0.307268
Target:  5'- uGCGGCCgcaaCAGCGC-ACGCG-CGUUa -3'
miRNA:   3'- -CGCCGGag--GUUGCGcUGCGCaGCGAc -5'
33162 5' -59.4 NC_007497.1 + 42578 0.69 0.31404
Target:  5'- gGCGGCCUgCCGugGCGagccgugcuauuuGCGCGUgccCGgUGu -3'
miRNA:   3'- -CGCCGGA-GGUugCGC-------------UGCGCA---GCgAC- -5'
33162 5' -59.4 NC_007497.1 + 35565 0.69 0.314799
Target:  5'- cCGGCCcaugCCGcGCGCGAuCGCGUCGg-- -3'
miRNA:   3'- cGCCGGa---GGU-UGCGCU-GCGCAGCgac -5'
33162 5' -59.4 NC_007497.1 + 3706 0.69 0.314799
Target:  5'- aGCGGa--UCAGCGCGGCGCuUCGCa- -3'
miRNA:   3'- -CGCCggaGGUUGCGCUGCGcAGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.