miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33162 5' -59.4 NC_007497.1 + 36992 0.66 0.473293
Target:  5'- gGCGGCg-CCGgagGCGgaacaagcuuCGGCGCGcCGCUGa -3'
miRNA:   3'- -CGCCGgaGGU---UGC----------GCUGCGCaGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 43103 0.67 0.415858
Target:  5'- uGCGGCgCUCCAGCaCGgACGgGUgCGCc- -3'
miRNA:   3'- -CGCCG-GAGGUUGcGC-UGCgCA-GCGac -5'
33162 5' -59.4 NC_007497.1 + 35975 0.66 0.43359
Target:  5'- cGCGGCUUCCGcguaucCGCGAagcgaccCGCG-CGCa- -3'
miRNA:   3'- -CGCCGGAGGUu-----GCGCU-------GCGCaGCGac -5'
33162 5' -59.4 NC_007497.1 + 29557 0.66 0.444054
Target:  5'- cGCGGCCauaCA--GCGGCGCGacauaucCGCUGg -3'
miRNA:   3'- -CGCCGGag-GUugCGCUGCGCa------GCGAC- -5'
33162 5' -59.4 NC_007497.1 + 4088 0.66 0.453689
Target:  5'- cGCGcGCCuucccguuccuUCCGGCcCG-CGCGUCGCg- -3'
miRNA:   3'- -CGC-CGG-----------AGGUUGcGCuGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 33988 0.66 0.453689
Target:  5'- uGCGGCgUCCAucgcugccaGCGUG-CGCG-CGCc- -3'
miRNA:   3'- -CGCCGgAGGU---------UGCGCuGCGCaGCGac -5'
33162 5' -59.4 NC_007497.1 + 40804 0.66 0.453689
Target:  5'- --uGCCgcaucgaaCGGCGCGA-GCGUCGCUGc -3'
miRNA:   3'- cgcCGGag------GUUGCGCUgCGCAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 23453 0.66 0.463437
Target:  5'- gGCGGCCgccuucaugUCGGCGaucucGCGCG-CGCUGa -3'
miRNA:   3'- -CGCCGGa--------GGUUGCgc---UGCGCaGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 11626 0.66 0.473293
Target:  5'- uGCGGCgC-CCAGCGaugaGugGCGUgGUa- -3'
miRNA:   3'- -CGCCG-GaGGUUGCg---CugCGCAgCGac -5'
33162 5' -59.4 NC_007497.1 + 23868 0.67 0.406706
Target:  5'- cGCGGCacucaUCCGGCGUGAa--G-CGCUGg -3'
miRNA:   3'- -CGCCGg----AGGUUGCGCUgcgCaGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 3515 0.67 0.388786
Target:  5'- cGCGaCCUUCAccuucACGCG-CGCGUCGUc- -3'
miRNA:   3'- -CGCcGGAGGU-----UGCGCuGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 44651 0.68 0.371392
Target:  5'- cCGGCCgCCGAUGCuGuCGCGggGCUGu -3'
miRNA:   3'- cGCCGGaGGUUGCG-CuGCGCagCGAC- -5'
33162 5' -59.4 NC_007497.1 + 34585 0.73 0.161616
Target:  5'- gGCGGCCgCCGuuuGCGCGAcCGCGgcaCGCUc -3'
miRNA:   3'- -CGCCGGaGGU---UGCGCU-GCGCa--GCGAc -5'
33162 5' -59.4 NC_007497.1 + 16674 0.71 0.233435
Target:  5'- aGCGcGCCgCUcGCGUGAcCGCGUCGCg- -3'
miRNA:   3'- -CGC-CGGaGGuUGCGCU-GCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 6187 0.71 0.23948
Target:  5'- aGCGGCCUCC-GCGaGACucagcuuguggGUGUCGUUGu -3'
miRNA:   3'- -CGCCGGAGGuUGCgCUG-----------CGCAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 33050 0.7 0.264972
Target:  5'- cGCGGCCagcUCUcGCGCGACcucUCGCUGa -3'
miRNA:   3'- -CGCCGG---AGGuUGCGCUGcgcAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 22852 0.7 0.278523
Target:  5'- uGCGGCCgCCAuCGUucGCGCG-CGCUGc -3'
miRNA:   3'- -CGCCGGaGGUuGCGc-UGCGCaGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 26966 0.69 0.285502
Target:  5'- aGCGGUCgaCCAACGUaaGCGUGUCGCc- -3'
miRNA:   3'- -CGCCGGa-GGUUGCGc-UGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 38612 0.69 0.307268
Target:  5'- uGCGGCCgcaaCAGCGC-ACGCG-CGUUa -3'
miRNA:   3'- -CGCCGGag--GUUGCGcUGCGCaGCGAc -5'
33162 5' -59.4 NC_007497.1 + 35565 0.69 0.314799
Target:  5'- cCGGCCcaugCCGcGCGCGAuCGCGUCGg-- -3'
miRNA:   3'- cGCCGGa---GGU-UGCGCU-GCGCAGCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.