miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33162 5' -59.4 NC_007497.1 + 3515 0.67 0.388786
Target:  5'- cGCGaCCUUCAccuucACGCG-CGCGUCGUc- -3'
miRNA:   3'- -CGCcGGAGGU-----UGCGCuGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 3706 0.69 0.314799
Target:  5'- aGCGGa--UCAGCGCGGCGCuUCGCa- -3'
miRNA:   3'- -CGCCggaGGUUGCGCUGCGcAGCGac -5'
33162 5' -59.4 NC_007497.1 + 4088 0.66 0.453689
Target:  5'- cGCGcGCCuucccguuccuUCCGGCcCG-CGCGUCGCg- -3'
miRNA:   3'- -CGC-CGG-----------AGGUUGcGCuGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 4550 0.66 0.453689
Target:  5'- gGCgGGUCUgCCGACGUccGACGCGUUGg-- -3'
miRNA:   3'- -CG-CCGGA-GGUUGCG--CUGCGCAGCgac -5'
33162 5' -59.4 NC_007497.1 + 5585 0.67 0.414938
Target:  5'- gGCGGCCUgcugaauccggagCCGaugcGCGCGAUGaagGUCGCc- -3'
miRNA:   3'- -CGCCGGA-------------GGU----UGCGCUGCg--CAGCGac -5'
33162 5' -59.4 NC_007497.1 + 6187 0.71 0.23948
Target:  5'- aGCGGCCUCC-GCGaGACucagcuuguggGUGUCGUUGu -3'
miRNA:   3'- -CGCCGGAGGuUGCgCUG-----------CGCAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 6873 0.67 0.397681
Target:  5'- uGCGGCCggcgUUCGACGCGuCGa-UCGCUc -3'
miRNA:   3'- -CGCCGG----AGGUUGCGCuGCgcAGCGAc -5'
33162 5' -59.4 NC_007497.1 + 8701 0.73 0.173713
Target:  5'- gGCGGCUauUUCAACGCGGUGCGUgaugguggucgugcCGCUGa -3'
miRNA:   3'- -CGCCGG--AGGUUGCGCUGCGCA--------------GCGAC- -5'
33162 5' -59.4 NC_007497.1 + 9211 0.69 0.32247
Target:  5'- cCGGCguggCCGACGCGAuCGCG-CGCg- -3'
miRNA:   3'- cGCCGga--GGUUGCGCU-GCGCaGCGac -5'
33162 5' -59.4 NC_007497.1 + 9953 0.75 0.126256
Target:  5'- cGCGGCCgcgcagggcgagcUCgAGCGUccGAgGCGUCGCUGg -3'
miRNA:   3'- -CGCCGG-------------AGgUUGCG--CUgCGCAGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 9993 0.7 0.264972
Target:  5'- -nGGCgUUggcgCAGCaGCGACGCGUCGCg- -3'
miRNA:   3'- cgCCGgAG----GUUG-CGCUGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 10033 0.67 0.376554
Target:  5'- cGCGGCCaagggaacgaucgaUCaGACGCGcuACGCGgcggcgcUCGCUGa -3'
miRNA:   3'- -CGCCGG--------------AGgUUGCGC--UGCGC-------AGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 10099 0.74 0.145087
Target:  5'- cGCGGCCgCCgAGCGCGAaguaGCGaUCGCg- -3'
miRNA:   3'- -CGCCGGaGG-UUGCGCUg---CGC-AGCGac -5'
33162 5' -59.4 NC_007497.1 + 10774 0.69 0.285502
Target:  5'- aGgGGCCgcggCCGACaGgGGCGCGcgcaCGCUGg -3'
miRNA:   3'- -CgCCGGa---GGUUG-CgCUGCGCa---GCGAC- -5'
33162 5' -59.4 NC_007497.1 + 11012 0.68 0.360374
Target:  5'- cGCGGCaggCCGgguugauuGCGgGGCGCGcggaugcauacaagUCGCUGg -3'
miRNA:   3'- -CGCCGga-GGU--------UGCgCUGCGC--------------AGCGAC- -5'
33162 5' -59.4 NC_007497.1 + 11626 0.66 0.473293
Target:  5'- uGCGGCgC-CCAGCGaugaGugGCGUgGUa- -3'
miRNA:   3'- -CGCCG-GaGGUUGCg---CugCGCAgCGac -5'
33162 5' -59.4 NC_007497.1 + 12305 0.66 0.473293
Target:  5'- cGCGGCCgccgCCGGCgGCaACGCGUaCGg-- -3'
miRNA:   3'- -CGCCGGa---GGUUG-CGcUGCGCA-GCgac -5'
33162 5' -59.4 NC_007497.1 + 12612 0.67 0.397681
Target:  5'- gGCGGaa--CGGC-CGACGCGUCGCa- -3'
miRNA:   3'- -CGCCggagGUUGcGCUGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 14066 0.7 0.251961
Target:  5'- uGgGGCCagcugaCAGCGCGuCGUGUCGCg- -3'
miRNA:   3'- -CgCCGGag----GUUGCGCuGCGCAGCGac -5'
33162 5' -59.4 NC_007497.1 + 16674 0.71 0.233435
Target:  5'- aGCGcGCCgCUcGCGUGAcCGCGUCGCg- -3'
miRNA:   3'- -CGC-CGGaGGuUGCGCU-GCGCAGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.