Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33166 | 5' | -53.9 | NC_007497.1 | + | 36009 | 1.12 | 0.000813 |
Target: 5'- gCAGCCUCGAUCGCGCGUACCGUUACCu -3' miRNA: 3'- -GUCGGAGCUAGCGCGCAUGGCAAUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 9930 | 0.79 | 0.143555 |
Target: 5'- gCGGCCgUGAUCGCGCGcgagACCGcgGCCg -3' miRNA: 3'- -GUCGGaGCUAGCGCGCa---UGGCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 9217 | 0.75 | 0.260747 |
Target: 5'- uGGCCgacgCGAUCGCGCGcggcauggGCCGggGCa -3' miRNA: 3'- gUCGGa---GCUAGCGCGCa-------UGGCaaUGg -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 11335 | 0.73 | 0.344157 |
Target: 5'- uCGGCCgcgcaGGUCGCGCGUAUCGgcgucaaugcGCCu -3' miRNA: 3'- -GUCGGag---CUAGCGCGCAUGGCaa--------UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 24396 | 0.73 | 0.361241 |
Target: 5'- -cGuCCUCGAUCGCGCGcaggaauacGCCGagUGCCc -3' miRNA: 3'- guC-GGAGCUAGCGCGCa--------UGGCa-AUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 38762 | 0.72 | 0.396218 |
Target: 5'- cCGGCCUCGAUCGCG-GUGgucaucgcauccuCCGUcucgaagACCu -3' miRNA: 3'- -GUCGGAGCUAGCGCgCAU-------------GGCAa------UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 3843 | 0.71 | 0.455093 |
Target: 5'- gCGGCgUCGA-CGUGCG-GCCGaUUGCCc -3' miRNA: 3'- -GUCGgAGCUaGCGCGCaUGGC-AAUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 3864 | 0.71 | 0.455093 |
Target: 5'- gCAGCCUCGGUCauCGCGaugGCCGgcgACg -3' miRNA: 3'- -GUCGGAGCUAGc-GCGCa--UGGCaa-UGg -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 41615 | 0.7 | 0.503521 |
Target: 5'- gGGCCUCGAcagcaucagcaucaUCaaaaGCGCGcugGCCGgcGCCg -3' miRNA: 3'- gUCGGAGCU--------------AG----CGCGCa--UGGCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 40381 | 0.7 | 0.505633 |
Target: 5'- uGGCCcu--UCGUGCGUaacgaguucgucaACCGUUACCg -3' miRNA: 3'- gUCGGagcuAGCGCGCA-------------UGGCAAUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 26796 | 0.7 | 0.50669 |
Target: 5'- -cGCCgucgUCGAUCGcCGCGUACU--UGCCc -3' miRNA: 3'- guCGG----AGCUAGC-GCGCAUGGcaAUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 4197 | 0.7 | 0.50669 |
Target: 5'- aAGCgUCGAUgGCGCGcGCCGgguauuCCc -3' miRNA: 3'- gUCGgAGCUAgCGCGCaUGGCaau---GG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 23305 | 0.7 | 0.50669 |
Target: 5'- gAGCCUCGAUCucgcgGCGCugcucuucgaGUugCGUUuCCa -3' miRNA: 3'- gUCGGAGCUAG-----CGCG----------CAugGCAAuGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 31406 | 0.7 | 0.538819 |
Target: 5'- -uGCCgUCGuuaccUUGCGUGgcaACCGUUACCg -3' miRNA: 3'- guCGG-AGCu----AGCGCGCa--UGGCAAUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 11614 | 0.69 | 0.549687 |
Target: 5'- gCGGCCUaCGAUCGCGcCGUGCa---GCUc -3' miRNA: 3'- -GUCGGA-GCUAGCGC-GCAUGgcaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 39663 | 0.69 | 0.549687 |
Target: 5'- gCAGCCcguUCGGcUUGUuCGUGCCGUcGCCa -3' miRNA: 3'- -GUCGG---AGCU-AGCGcGCAUGGCAaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 32455 | 0.69 | 0.571615 |
Target: 5'- uGGCCgcCGGUCGCaagauggaaccCGUACgCGUUGCCg -3' miRNA: 3'- gUCGGa-GCUAGCGc----------GCAUG-GCAAUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 2538 | 0.69 | 0.571615 |
Target: 5'- -uGCC-CGggCGUGCGcGCCGgcgGCCg -3' miRNA: 3'- guCGGaGCuaGCGCGCaUGGCaa-UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 5613 | 0.69 | 0.581553 |
Target: 5'- aCAGCCUcaaCGAUCagcgucaGCGCGUACgG--ACCg -3' miRNA: 3'- -GUCGGA---GCUAG-------CGCGCAUGgCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 28604 | 0.69 | 0.590416 |
Target: 5'- aCGGUUUCGAagaacgucgccgucUCgGUGCGUGCCGggAUCa -3' miRNA: 3'- -GUCGGAGCU--------------AG-CGCGCAUGGCaaUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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