Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33166 | 5' | -53.9 | NC_007497.1 | + | 2251 | 0.66 | 0.747817 |
Target: 5'- uCGGCCaCGGUCGgGCGcuucGCaCGgcgUGCCa -3' miRNA: 3'- -GUCGGaGCUAGCgCGCa---UG-GCa--AUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 2414 | 0.66 | 0.758297 |
Target: 5'- -uGCCgCGAugUCGCGCuuagcaGUGCCGgugcGCCg -3' miRNA: 3'- guCGGaGCU--AGCGCG------CAUGGCaa--UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 2538 | 0.69 | 0.571615 |
Target: 5'- -uGCC-CGggCGUGCGcGCCGgcgGCCg -3' miRNA: 3'- guCGGaGCuaGCGCGCaUGGCaa-UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 3843 | 0.71 | 0.455093 |
Target: 5'- gCGGCgUCGA-CGUGCG-GCCGaUUGCCc -3' miRNA: 3'- -GUCGgAGCUaGCGCGCaUGGC-AAUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 3864 | 0.71 | 0.455093 |
Target: 5'- gCAGCCUCGGUCauCGCGaugGCCGgcgACg -3' miRNA: 3'- -GUCGGAGCUAGc-GCGCa--UGGCaa-UGg -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 3901 | 0.68 | 0.620472 |
Target: 5'- uCAuCUUCGGUCGCgagucgucgugcacGCGUGCCGUcccgacguucuucgUGCCg -3' miRNA: 3'- -GUcGGAGCUAGCG--------------CGCAUGGCA--------------AUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 4019 | 0.68 | 0.638332 |
Target: 5'- --uCCUCaauUCGCGcCGUGCCGUcucgGCCg -3' miRNA: 3'- gucGGAGcu-AGCGC-GCAUGGCAa---UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 4108 | 0.67 | 0.671744 |
Target: 5'- cCGGCC-CGcgCGuCGCGcACCGcaGCCa -3' miRNA: 3'- -GUCGGaGCuaGC-GCGCaUGGCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 4197 | 0.7 | 0.50669 |
Target: 5'- aAGCgUCGAUgGCGCGcGCCGgguauuCCc -3' miRNA: 3'- gUCGgAGCUAgCGCGCaUGGCaau---GG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 5613 | 0.69 | 0.581553 |
Target: 5'- aCAGCCUcaaCGAUCagcgucaGCGCGUACgG--ACCg -3' miRNA: 3'- -GUCGGA---GCUAG-------CGCGCAUGgCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 7177 | 0.66 | 0.758297 |
Target: 5'- uGGCCgaccagaucaUCGAUCGCGUGgaaucgACCGgcAUg -3' miRNA: 3'- gUCGG----------AGCUAGCGCGCa-----UGGCaaUGg -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 9217 | 0.75 | 0.260747 |
Target: 5'- uGGCCgacgCGAUCGCGCGcggcauggGCCGggGCa -3' miRNA: 3'- gUCGGa---GCUAGCGCGCa-------UGGCaaUGg -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 9930 | 0.79 | 0.143555 |
Target: 5'- gCGGCCgUGAUCGCGCGcgagACCGcgGCCg -3' miRNA: 3'- -GUCGGaGCUAGCGCGCa---UGGCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 10201 | 0.66 | 0.758297 |
Target: 5'- -uGCCgCGGUCGCGCaaACgGcgGCCg -3' miRNA: 3'- guCGGaGCUAGCGCGcaUGgCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 11335 | 0.73 | 0.344157 |
Target: 5'- uCGGCCgcgcaGGUCGCGCGUAUCGgcgucaaugcGCCu -3' miRNA: 3'- -GUCGGag---CUAGCGCGCAUGGCaa--------UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 11614 | 0.69 | 0.549687 |
Target: 5'- gCGGCCUaCGAUCGCGcCGUGCa---GCUc -3' miRNA: 3'- -GUCGGA-GCUAGCGC-GCAUGgcaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 16944 | 0.69 | 0.604866 |
Target: 5'- aGGUCU-GAUCGUGCGUguGCCGUgaACUa -3' miRNA: 3'- gUCGGAgCUAGCGCGCA--UGGCAa-UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 20837 | 0.67 | 0.671744 |
Target: 5'- gGGgCUCGAgcucgUCGCGCG-GCCGgacCCg -3' miRNA: 3'- gUCgGAGCU-----AGCGCGCaUGGCaauGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 23305 | 0.7 | 0.50669 |
Target: 5'- gAGCCUCGAUCucgcgGCGCugcucuucgaGUugCGUUuCCa -3' miRNA: 3'- gUCGGAGCUAG-----CGCG----------CAugGCAAuGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 24396 | 0.73 | 0.361241 |
Target: 5'- -cGuCCUCGAUCGCGCGcaggaauacGCCGagUGCCc -3' miRNA: 3'- guC-GGAGCUAGCGCGCa--------UGGCa-AUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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