miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33166 5' -53.9 NC_007497.1 + 2414 0.66 0.758297
Target:  5'- -uGCCgCGAugUCGCGCuuagcaGUGCCGgugcGCCg -3'
miRNA:   3'- guCGGaGCU--AGCGCG------CAUGGCaa--UGG- -5'
33166 5' -53.9 NC_007497.1 + 34574 0.68 0.649489
Target:  5'- gAGCCU-GcgCGgGCGgccGCCGUUugCg -3'
miRNA:   3'- gUCGGAgCuaGCgCGCa--UGGCAAugG- -5'
33166 5' -53.9 NC_007497.1 + 4108 0.67 0.671744
Target:  5'- cCGGCC-CGcgCGuCGCGcACCGcaGCCa -3'
miRNA:   3'- -GUCGGaGCuaGC-GCGCaUGGCaaUGG- -5'
33166 5' -53.9 NC_007497.1 + 33830 0.67 0.671744
Target:  5'- -cGCCUCGuauucCGCGCGUugcuggGCgGUcaUACCg -3'
miRNA:   3'- guCGGAGCua---GCGCGCA------UGgCA--AUGG- -5'
33166 5' -53.9 NC_007497.1 + 28422 0.67 0.682819
Target:  5'- uCGGCauuCUgGAUCG-GCGUACCGUcgagguagACCg -3'
miRNA:   3'- -GUCG---GAgCUAGCgCGCAUGGCAa-------UGG- -5'
33166 5' -53.9 NC_007497.1 + 27222 0.67 0.698239
Target:  5'- -cGCCUCGuAUCGCGaCGUgagcaaaauccauugGCCGacgcgaugUGCCu -3'
miRNA:   3'- guCGGAGC-UAGCGC-GCA---------------UGGCa-------AUGG- -5'
33166 5' -53.9 NC_007497.1 + 29267 0.67 0.7157
Target:  5'- gCGGCCguacaugUGAU-GCGCGaacaUGCCGUcGCCg -3'
miRNA:   3'- -GUCGGa------GCUAgCGCGC----AUGGCAaUGG- -5'
33166 5' -53.9 NC_007497.1 + 27863 0.66 0.72543
Target:  5'- uCAGaCCUCGAaCGUgguacgaGCGcACCGggACCu -3'
miRNA:   3'- -GUC-GGAGCUaGCG-------CGCaUGGCaaUGG- -5'
33166 5' -53.9 NC_007497.1 + 2251 0.66 0.747817
Target:  5'- uCGGCCaCGGUCGgGCGcuucGCaCGgcgUGCCa -3'
miRNA:   3'- -GUCGGaGCUAGCgCGCa---UG-GCa--AUGG- -5'
33166 5' -53.9 NC_007497.1 + 4019 0.68 0.638332
Target:  5'- --uCCUCaauUCGCGcCGUGCCGUcucgGCCg -3'
miRNA:   3'- gucGGAGcu-AGCGC-GCAUGGCAa---UGG- -5'
33166 5' -53.9 NC_007497.1 + 29694 0.68 0.626053
Target:  5'- uCGGCCaugcUCGGcUGCGcCGUGCCGUUcggaugcgaaugcACCa -3'
miRNA:   3'- -GUCGG----AGCUaGCGC-GCAUGGCAA-------------UGG- -5'
33166 5' -53.9 NC_007497.1 + 3901 0.68 0.620472
Target:  5'- uCAuCUUCGGUCGCgagucgucgugcacGCGUGCCGUcccgacguucuucgUGCCg -3'
miRNA:   3'- -GUcGGAGCUAGCG--------------CGCAUGGCA--------------AUGG- -5'
33166 5' -53.9 NC_007497.1 + 38762 0.72 0.396218
Target:  5'- cCGGCCUCGAUCGCG-GUGgucaucgcauccuCCGUcucgaagACCu -3'
miRNA:   3'- -GUCGGAGCUAGCGCgCAU-------------GGCAa------UGG- -5'
33166 5' -53.9 NC_007497.1 + 3843 0.71 0.455093
Target:  5'- gCGGCgUCGA-CGUGCG-GCCGaUUGCCc -3'
miRNA:   3'- -GUCGgAGCUaGCGCGCaUGGC-AAUGG- -5'
33166 5' -53.9 NC_007497.1 + 26796 0.7 0.50669
Target:  5'- -cGCCgucgUCGAUCGcCGCGUACU--UGCCc -3'
miRNA:   3'- guCGG----AGCUAGC-GCGCAUGGcaAUGG- -5'
33166 5' -53.9 NC_007497.1 + 31406 0.7 0.538819
Target:  5'- -uGCCgUCGuuaccUUGCGUGgcaACCGUUACCg -3'
miRNA:   3'- guCGG-AGCu----AGCGCGCa--UGGCAAUGG- -5'
33166 5' -53.9 NC_007497.1 + 39663 0.69 0.549687
Target:  5'- gCAGCCcguUCGGcUUGUuCGUGCCGUcGCCa -3'
miRNA:   3'- -GUCGG---AGCU-AGCGcGCAUGGCAaUGG- -5'
33166 5' -53.9 NC_007497.1 + 2538 0.69 0.571615
Target:  5'- -uGCC-CGggCGUGCGcGCCGgcgGCCg -3'
miRNA:   3'- guCGGaGCuaGCGCGCaUGGCaa-UGG- -5'
33166 5' -53.9 NC_007497.1 + 32455 0.69 0.571615
Target:  5'- uGGCCgcCGGUCGCaagauggaaccCGUACgCGUUGCCg -3'
miRNA:   3'- gUCGGa-GCUAGCGc----------GCAUG-GCAAUGG- -5'
33166 5' -53.9 NC_007497.1 + 5613 0.69 0.581553
Target:  5'- aCAGCCUcaaCGAUCagcgucaGCGCGUACgG--ACCg -3'
miRNA:   3'- -GUCGGA---GCUAG-------CGCGCAUGgCaaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.