miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33168 5' -52.8 NC_007497.1 + 36335 1.12 0.000916
Target:  5'- cUGGAAAACUGCCGACGCGACCAUCGCu -3'
miRNA:   3'- -ACCUUUUGACGGCUGCGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 24278 0.82 0.114467
Target:  5'- gUGGGGAgcguuACUGCCGugGCG-UCGUCGCu -3'
miRNA:   3'- -ACCUUU-----UGACGGCugCGCuGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 35655 0.79 0.185355
Target:  5'- aGGAAuugcccGGCgugGCCGACGCGAUCG-CGCg -3'
miRNA:   3'- aCCUU------UUGa--CGGCUGCGCUGGUaGCG- -5'
33168 5' -52.8 NC_007497.1 + 21495 0.77 0.230609
Target:  5'- gUGuGAAuGCUGCCGGCGCcuuuCCAUCGUc -3'
miRNA:   3'- -AC-CUUuUGACGGCUGCGcu--GGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 33159 0.77 0.23688
Target:  5'- cGGAccuccuuuucGAGCUGCaCGGCGCGAUCGUaggcCGCg -3'
miRNA:   3'- aCCU----------UUUGACG-GCUGCGCUGGUA----GCG- -5'
33168 5' -52.8 NC_007497.1 + 1186 0.77 0.239428
Target:  5'- gUGuGGGAGCUGCCGGagcuucaccgugcaGUGAUCAUCGCg -3'
miRNA:   3'- -AC-CUUUUGACGGCUg-------------CGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 27152 0.76 0.270396
Target:  5'- -----cGCUGCCGGCGCGGuuGUCGUg -3'
miRNA:   3'- accuuuUGACGGCUGCGCUggUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 44776 0.75 0.318729
Target:  5'- cGGAu-GCUguuuugGCCggcaaguccaauaagGACGCGGCCAUCGCg -3'
miRNA:   3'- aCCUuuUGA------CGG---------------CUGCGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 23881 0.75 0.326842
Target:  5'- cGGcguGAAGCgcugGCCGGCGCGcacguccuucgugucGCCAUUGCa -3'
miRNA:   3'- aCC---UUUUGa---CGGCUGCGC---------------UGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 1 0.74 0.375073
Target:  5'- -GGAAcguGCggucuagGCCGAgGCGGCCAUCa- -3'
miRNA:   3'- aCCUUu--UGa------CGGCUgCGCUGGUAGcg -5'
33168 5' -52.8 NC_007497.1 + 17782 0.73 0.384177
Target:  5'- cGGAGAGCcGUCGuCGUGAagggcgauuCCGUCGCg -3'
miRNA:   3'- aCCUUUUGaCGGCuGCGCU---------GGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 23224 0.73 0.412353
Target:  5'- gGGAGAGCUGgCGgaauACGCuGACCGUgccCGCa -3'
miRNA:   3'- aCCUUUUGACgGC----UGCG-CUGGUA---GCG- -5'
33168 5' -52.8 NC_007497.1 + 16671 0.72 0.431832
Target:  5'- gGGAGcGC-GCCGcucGCGUGACCgcGUCGCg -3'
miRNA:   3'- aCCUUuUGaCGGC---UGCGCUGG--UAGCG- -5'
33168 5' -52.8 NC_007497.1 + 2281 0.72 0.46203
Target:  5'- cUGGcgGcCUGCCGugGCGAgCcgUGCu -3'
miRNA:   3'- -ACCuuUuGACGGCugCGCUgGuaGCG- -5'
33168 5' -52.8 NC_007497.1 + 25861 0.72 0.46203
Target:  5'- -cGAAAAUgcgGCCGcCGUgcaGACCGUCGCg -3'
miRNA:   3'- acCUUUUGa--CGGCuGCG---CUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 43896 0.71 0.493303
Target:  5'- cGGuuuGAAGCUGuuGuCGCGACCuccuUCGUc -3'
miRNA:   3'- aCC---UUUUGACggCuGCGCUGGu---AGCG- -5'
33168 5' -52.8 NC_007497.1 + 8182 0.71 0.493303
Target:  5'- cUGGGAAAuCUGgagaCGACGCG-CgAUCGCg -3'
miRNA:   3'- -ACCUUUU-GACg---GCUGCGCuGgUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 6145 0.71 0.536426
Target:  5'- cGGAGAACUGCUcgGACGgcgaGAUUAUCGa -3'
miRNA:   3'- aCCUUUUGACGG--CUGCg---CUGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 40586 0.7 0.569608
Target:  5'- cGGGAAuac-CCGGCGCGcGCCAUCGa -3'
miRNA:   3'- aCCUUUugacGGCUGCGC-UGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 18503 0.7 0.569608
Target:  5'- cGaGAGAACUgGCCGGCcCGACgAUuCGCg -3'
miRNA:   3'- aC-CUUUUGA-CGGCUGcGCUGgUA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.