miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33168 5' -52.8 NC_007497.1 + 8697 0.67 0.748084
Target:  5'- aGGccGGCgucuCCGAagaaguguuUGCGGCCGUCGCa -3'
miRNA:   3'- aCCuuUUGac--GGCU---------GCGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 39221 0.68 0.671017
Target:  5'- aGGcc-GCcGCCGACGCGcuUCGUCGUg -3'
miRNA:   3'- aCCuuuUGaCGGCUGCGCu-GGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 26776 0.68 0.682239
Target:  5'- cGGcc-GCUGCUGAaucUGCGcGCCGUCGUc -3'
miRNA:   3'- aCCuuuUGACGGCU---GCGC-UGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 27381 0.68 0.69341
Target:  5'- cGGGucguuauAGCUGaCGAgCGCGACCGUguacCGCg -3'
miRNA:   3'- aCCUu------UUGACgGCU-GCGCUGGUA----GCG- -5'
33168 5' -52.8 NC_007497.1 + 27112 0.67 0.714453
Target:  5'- cGGAuacGGCcGCCGAUGCGccgccccGCCuugCGCg -3'
miRNA:   3'- aCCUu--UUGaCGGCUGCGC-------UGGua-GCG- -5'
33168 5' -52.8 NC_007497.1 + 24912 0.67 0.7265
Target:  5'- -aGAucGCUGuuGACcgccuggcCGACCAUCGCc -3'
miRNA:   3'- acCUuuUGACggCUGc-------GCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 33461 0.67 0.737348
Target:  5'- cGcGAccuGCgcgGCCGACuGCG-CCAUCGUg -3'
miRNA:   3'- aC-CUuu-UGa--CGGCUG-CGCuGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 15456 0.67 0.748084
Target:  5'- aGGGAAgcGCUGUCGcauuCGCGuACggaGUCGCg -3'
miRNA:   3'- aCCUUU--UGACGGCu---GCGC-UGg--UAGCG- -5'
33168 5' -52.8 NC_007497.1 + 33632 0.67 0.748084
Target:  5'- -aGAGAGCUGCUu-CGCGACCuccAUCuGCu -3'
miRNA:   3'- acCUUUUGACGGcuGCGCUGG---UAG-CG- -5'
33168 5' -52.8 NC_007497.1 + 16502 0.69 0.64847
Target:  5'- cGGAugaaUGCCGACGacauGACCGcacugcgcaaguUCGCg -3'
miRNA:   3'- aCCUuuugACGGCUGCg---CUGGU------------AGCG- -5'
33168 5' -52.8 NC_007497.1 + 34583 0.7 0.592011
Target:  5'- cGGGcgGCcGCCGuuuGCGCGACCGcggcaCGCu -3'
miRNA:   3'- aCCUuuUGaCGGC---UGCGCUGGUa----GCG- -5'
33168 5' -52.8 NC_007497.1 + 29260 0.7 0.592011
Target:  5'- cGGAcAGGCgGCCGuacaugugauGCGCGaacauGCCGUCGCc -3'
miRNA:   3'- aCCU-UUUGaCGGC----------UGCGC-----UGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 33159 0.77 0.23688
Target:  5'- cGGAccuccuuuucGAGCUGCaCGGCGCGAUCGUaggcCGCg -3'
miRNA:   3'- aCCU----------UUUGACG-GCUGCGCUGGUA----GCG- -5'
33168 5' -52.8 NC_007497.1 + 23881 0.75 0.326842
Target:  5'- cGGcguGAAGCgcugGCCGGCGCGcacguccuucgugucGCCAUUGCa -3'
miRNA:   3'- aCC---UUUUGa---CGGCUGCGC---------------UGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 1 0.74 0.375073
Target:  5'- -GGAAcguGCggucuagGCCGAgGCGGCCAUCa- -3'
miRNA:   3'- aCCUUu--UGa------CGGCUgCGCUGGUAGcg -5'
33168 5' -52.8 NC_007497.1 + 16671 0.72 0.431832
Target:  5'- gGGAGcGC-GCCGcucGCGUGACCgcGUCGCg -3'
miRNA:   3'- aCCUUuUGaCGGC---UGCGCUGG--UAGCG- -5'
33168 5' -52.8 NC_007497.1 + 8182 0.71 0.493303
Target:  5'- cUGGGAAAuCUGgagaCGACGCG-CgAUCGCg -3'
miRNA:   3'- -ACCUUUU-GACg---GCUGCGCuGgUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 43896 0.71 0.493303
Target:  5'- cGGuuuGAAGCUGuuGuCGCGACCuccuUCGUc -3'
miRNA:   3'- aCC---UUUUGACggCuGCGCUGGu---AGCG- -5'
33168 5' -52.8 NC_007497.1 + 18503 0.7 0.569608
Target:  5'- cGaGAGAACUgGCCGGCcCGACgAUuCGCg -3'
miRNA:   3'- aC-CUUUUGA-CGGCUGcGCUGgUA-GCG- -5'
33168 5' -52.8 NC_007497.1 + 40586 0.7 0.569608
Target:  5'- cGGGAAuac-CCGGCGCGcGCCAUCGa -3'
miRNA:   3'- aCCUUUugacGGCUGCGC-UGGUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.