miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33168 5' -52.8 NC_007497.1 + 1 0.74 0.375073
Target:  5'- -GGAAcguGCggucuagGCCGAgGCGGCCAUCa- -3'
miRNA:   3'- aCCUUu--UGa------CGGCUgCGCUGGUAGcg -5'
33168 5' -52.8 NC_007497.1 + 306 0.67 0.7265
Target:  5'- uUGGAGAGCcgcuugGCaCGAUcgGCGAUCAcaucgUCGCg -3'
miRNA:   3'- -ACCUUUUGa-----CG-GCUG--CGCUGGU-----AGCG- -5'
33168 5' -52.8 NC_007497.1 + 1186 0.77 0.239428
Target:  5'- gUGuGGGAGCUGCCGGagcuucaccgugcaGUGAUCAUCGCg -3'
miRNA:   3'- -AC-CUUUUGACGGCUg-------------CGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 1631 0.68 0.675511
Target:  5'- cGGGGAugUGCCGGagccuuugcucauauCgGCGAuccgUCAUCGCg -3'
miRNA:   3'- aCCUUUugACGGCU---------------G-CGCU----GGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 2174 0.68 0.704519
Target:  5'- cGGGAAg--GCUGGCGCGAUgAagGCg -3'
miRNA:   3'- aCCUUUugaCGGCUGCGCUGgUagCG- -5'
33168 5' -52.8 NC_007497.1 + 2281 0.72 0.46203
Target:  5'- cUGGcgGcCUGCCGugGCGAgCcgUGCu -3'
miRNA:   3'- -ACCuuUuGACGGCugCGCUgGuaGCG- -5'
33168 5' -52.8 NC_007497.1 + 2485 0.66 0.81907
Target:  5'- cGGGAAcgaucggcauGCUGCCGAUGaaccuGAUCAguaGCg -3'
miRNA:   3'- aCCUUU----------UGACGGCUGCg----CUGGUag-CG- -5'
33168 5' -52.8 NC_007497.1 + 4976 0.7 0.569608
Target:  5'- -uGAAAagccGCUgGCCGGUGCGGCCGUCGg -3'
miRNA:   3'- acCUUU----UGA-CGGCUGCGCUGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 5120 0.66 0.80946
Target:  5'- aUGGGcgcucGCUGagcaaCCGACGUGgACCGUCGa -3'
miRNA:   3'- -ACCUuu---UGAC-----GGCUGCGC-UGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 6145 0.71 0.536426
Target:  5'- cGGAGAACUGCUcgGACGgcgaGAUUAUCGa -3'
miRNA:   3'- aCCUUUUGACGG--CUGCg---CUGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 6653 0.67 0.76917
Target:  5'- -cGAAGGcCUGcCCGGCGCGuuucuaauCCAcUCGCg -3'
miRNA:   3'- acCUUUU-GAC-GGCUGCGCu-------GGU-AGCG- -5'
33168 5' -52.8 NC_007497.1 + 7198 0.7 0.569608
Target:  5'- gGGAGGGCaGCU--UGUGACCGUCGUc -3'
miRNA:   3'- aCCUUUUGaCGGcuGCGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 7267 0.66 0.80946
Target:  5'- cGGGAGuaccacCUGcCCGGCGC-ACCugaucuUCGCg -3'
miRNA:   3'- aCCUUUu-----GAC-GGCUGCGcUGGu-----AGCG- -5'
33168 5' -52.8 NC_007497.1 + 8182 0.71 0.493303
Target:  5'- cUGGGAAAuCUGgagaCGACGCG-CgAUCGCg -3'
miRNA:   3'- -ACCUUUU-GACg---GCUGCGCuGgUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 8697 0.67 0.748084
Target:  5'- aGGccGGCgucuCCGAagaaguguuUGCGGCCGUCGCa -3'
miRNA:   3'- aCCuuUUGac--GGCU---------GCGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 13622 0.66 0.789662
Target:  5'- aGGaAGAGCggGCCGcCGCaugGGCCGcCGCa -3'
miRNA:   3'- aCC-UUUUGa-CGGCuGCG---CUGGUaGCG- -5'
33168 5' -52.8 NC_007497.1 + 14509 0.67 0.758695
Target:  5'- cGGGAA--UGCCGG-GCcGCCGUCGUu -3'
miRNA:   3'- aCCUUUugACGGCUgCGcUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 15456 0.67 0.748084
Target:  5'- aGGGAAgcGCUGUCGcauuCGCGuACggaGUCGCg -3'
miRNA:   3'- aCCUUU--UGACGGCu---GCGC-UGg--UAGCG- -5'
33168 5' -52.8 NC_007497.1 + 16502 0.69 0.64847
Target:  5'- cGGAugaaUGCCGACGacauGACCGcacugcgcaaguUCGCg -3'
miRNA:   3'- aCCUuuugACGGCUGCg---CUGGU------------AGCG- -5'
33168 5' -52.8 NC_007497.1 + 16671 0.72 0.431832
Target:  5'- gGGAGcGC-GCCGcucGCGUGACCgcGUCGCg -3'
miRNA:   3'- aCCUUuUGaCGGC---UGCGCUGG--UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.