miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33174 5' -57.4 NC_007497.1 + 34901 0.66 0.526929
Target:  5'- --gGCCGCGcaGGGCGaGCuCGAGCGUc -3'
miRNA:   3'- uaaCGGCGUagCUUGC-CGcGCUCGCA- -5'
33174 5' -57.4 NC_007497.1 + 32624 0.66 0.526929
Target:  5'- -aUGCCGCucgcgcagCGAACcGCGCGAgauccGCGa -3'
miRNA:   3'- uaACGGCGua------GCUUGcCGCGCU-----CGCa -5'
33174 5' -57.4 NC_007497.1 + 16410 0.66 0.516263
Target:  5'- -gUGUCcgagguugGCGUCGAGCaGCGCGuauGCGUu -3'
miRNA:   3'- uaACGG--------CGUAGCUUGcCGCGCu--CGCA- -5'
33174 5' -57.4 NC_007497.1 + 1251 0.66 0.516263
Target:  5'- -cUGCUGCGUCGAguACGccaGCGCGAaccGCa- -3'
miRNA:   3'- uaACGGCGUAGCU--UGC---CGCGCU---CGca -5'
33174 5' -57.4 NC_007497.1 + 1719 0.66 0.515201
Target:  5'- --gGCCGCAcccagCGGGgaucacuCGGCGCGAuGUGUg -3'
miRNA:   3'- uaaCGGCGUa----GCUU-------GCCGCGCU-CGCA- -5'
33174 5' -57.4 NC_007497.1 + 16843 0.66 0.484818
Target:  5'- --gGCUGC-UCGuccgcCGGCGCGGGUGc -3'
miRNA:   3'- uaaCGGCGuAGCuu---GCCGCGCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 35223 0.66 0.484818
Target:  5'- -cUGCCGCGcuggugucucUUGAgaaGGCGCGgAGCGa -3'
miRNA:   3'- uaACGGCGU----------AGCUug-CCGCGC-UCGCa -5'
33174 5' -57.4 NC_007497.1 + 26859 0.67 0.464371
Target:  5'- --cGCgGCgAUCGAcgACGGCGCGcagauucagcAGCGg -3'
miRNA:   3'- uaaCGgCG-UAGCU--UGCCGCGC----------UCGCa -5'
33174 5' -57.4 NC_007497.1 + 9707 0.67 0.464371
Target:  5'- --aGCCGaCGUCGcggcCGGCGCGccgGGUGUg -3'
miRNA:   3'- uaaCGGC-GUAGCuu--GCCGCGC---UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 31531 0.67 0.451325
Target:  5'- -aUGCCGUAUCGcgucccaacuuggucCGGCGUcAGCGUa -3'
miRNA:   3'- uaACGGCGUAGCuu-------------GCCGCGcUCGCA- -5'
33174 5' -57.4 NC_007497.1 + 14858 0.67 0.444383
Target:  5'- uUUGCCGC--CGAGCagucGGCGaCGAGCa- -3'
miRNA:   3'- uAACGGCGuaGCUUG----CCGC-GCUCGca -5'
33174 5' -57.4 NC_007497.1 + 23244 0.67 0.444383
Target:  5'- --gGCCGCGUUG-ACGaGCGCGcgggagagcuGGCGg -3'
miRNA:   3'- uaaCGGCGUAGCuUGC-CGCGC----------UCGCa -5'
33174 5' -57.4 NC_007497.1 + 33838 0.67 0.444383
Target:  5'- --gGCCGgGUUGAuuGCGGgGCGcGCGg -3'
miRNA:   3'- uaaCGGCgUAGCU--UGCCgCGCuCGCa -5'
33174 5' -57.4 NC_007497.1 + 41166 0.67 0.444383
Target:  5'- --cGCCGCAUCGu-CGGCGUucGCc- -3'
miRNA:   3'- uaaCGGCGUAGCuuGCCGCGcuCGca -5'
33174 5' -57.4 NC_007497.1 + 2762 0.67 0.434572
Target:  5'- --gGCCGacucCGUCGGAUGGCcagccCGAGCGUu -3'
miRNA:   3'- uaaCGGC----GUAGCUUGCCGc----GCUCGCA- -5'
33174 5' -57.4 NC_007497.1 + 38662 0.67 0.434572
Target:  5'- --gGCCGCAUCGAAucauucCGGgaGUuuGAGCGUg -3'
miRNA:   3'- uaaCGGCGUAGCUU------GCCg-CG--CUCGCA- -5'
33174 5' -57.4 NC_007497.1 + 35874 0.67 0.434572
Target:  5'- --aGCCGC-UCGAcgcgACGGCG-GAGCuGUa -3'
miRNA:   3'- uaaCGGCGuAGCU----UGCCGCgCUCG-CA- -5'
33174 5' -57.4 NC_007497.1 + 16342 0.67 0.434572
Target:  5'- --cGCCGCuGUUGAACGgaGCGCGccggccgucGGCGUa -3'
miRNA:   3'- uaaCGGCG-UAGCUUGC--CGCGC---------UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 36061 0.67 0.428746
Target:  5'- -aUGCCGCAUC-AGCGGCaCGAccaccaucacgcaccGCGUu -3'
miRNA:   3'- uaACGGCGUAGcUUGCCGcGCU---------------CGCA- -5'
33174 5' -57.4 NC_007497.1 + 6047 0.67 0.424887
Target:  5'- --gGCCGCGUCGAGaaacacgaGGUGCuucGCGUg -3'
miRNA:   3'- uaaCGGCGUAGCUUg-------CCGCGcu-CGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.