miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33174 5' -57.4 NC_007497.1 + 40208 0.69 0.360878
Target:  5'- --cGCgGCAgcgcaGAugGGCGCGAacgGCGUg -3'
miRNA:   3'- uaaCGgCGUag---CUugCCGCGCU---CGCA- -5'
33174 5' -57.4 NC_007497.1 + 33838 0.67 0.444383
Target:  5'- --gGCCGgGUUGAuuGCGGgGCGcGCGg -3'
miRNA:   3'- uaaCGGCgUAGCU--UGCCgCGCuCGCa -5'
33174 5' -57.4 NC_007497.1 + 42889 0.75 0.136046
Target:  5'- --cGCCGCAUCGcGGCGGCGUcgGGGCa- -3'
miRNA:   3'- uaaCGGCGUAGC-UUGCCGCG--CUCGca -5'
33174 5' -57.4 NC_007497.1 + 6850 0.74 0.160816
Target:  5'- --aGUCGCuUCGAuCGGCGCGgAGCGUc -3'
miRNA:   3'- uaaCGGCGuAGCUuGCCGCGC-UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 33478 0.72 0.205596
Target:  5'- --gGCC-CAUCGGACGcGgGCGGGCGg -3'
miRNA:   3'- uaaCGGcGUAGCUUGC-CgCGCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 15710 0.72 0.216914
Target:  5'- -cUGCUacguGCGUUGGACGGUGgGAGCGc -3'
miRNA:   3'- uaACGG----CGUAGCUUGCCGCgCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 36122 0.7 0.291887
Target:  5'- -gUGCCGCugaugcggcauuugcGUCGAAUGcG-GCGAGCGUg -3'
miRNA:   3'- uaACGGCG---------------UAGCUUGC-CgCGCUCGCA- -5'
33174 5' -57.4 NC_007497.1 + 23012 0.7 0.311598
Target:  5'- --gGCCGCAUgCGGggGCGGCGaCGAcaGCGg -3'
miRNA:   3'- uaaCGGCGUA-GCU--UGCCGC-GCU--CGCa -5'
33174 5' -57.4 NC_007497.1 + 33100 0.69 0.327437
Target:  5'- --gGCCGCgcuGUCGAugGGCgacaacgcgcGCGAGCu- -3'
miRNA:   3'- uaaCGGCG---UAGCUugCCG----------CGCUCGca -5'
33174 5' -57.4 NC_007497.1 + 14858 0.67 0.444383
Target:  5'- uUUGCCGC--CGAGCagucGGCGaCGAGCa- -3'
miRNA:   3'- uAACGGCGuaGCUUG----CCGC-GCUCGca -5'
33174 5' -57.4 NC_007497.1 + 38662 0.67 0.434572
Target:  5'- --gGCCGCAUCGAAucauucCGGgaGUuuGAGCGUg -3'
miRNA:   3'- uaaCGGCGUAGCUU------GCCg-CG--CUCGCA- -5'
33174 5' -57.4 NC_007497.1 + 6047 0.67 0.424887
Target:  5'- --gGCCGCGUCGAGaaacacgaGGUGCuucGCGUg -3'
miRNA:   3'- uaaCGGCGUAGCUUg-------CCGCGcu-CGCA- -5'
33174 5' -57.4 NC_007497.1 + 34416 0.69 0.360878
Target:  5'- uUUGCUGCAggaggUCGAGCGccaGCGAGUGa -3'
miRNA:   3'- uAACGGCGU-----AGCUUGCcg-CGCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 35874 0.67 0.434572
Target:  5'- --aGCCGC-UCGAcgcgACGGCG-GAGCuGUa -3'
miRNA:   3'- uaaCGGCGuAGCU----UGCCGCgCUCG-CA- -5'
33174 5' -57.4 NC_007497.1 + 16745 0.68 0.369601
Target:  5'- --cGCgaCGCGgucacgCGAGCGGCGCGcucccGGCGUa -3'
miRNA:   3'- uaaCG--GCGUa-----GCUUGCCGCGC-----UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 43049 0.68 0.415333
Target:  5'- --cGCuCGCAUCGAGCG-CGCuGGGCu- -3'
miRNA:   3'- uaaCG-GCGUAGCUUGCcGCG-CUCGca -5'
33174 5' -57.4 NC_007497.1 + 16342 0.67 0.434572
Target:  5'- --cGCCGCuGUUGAACGgaGCGCGccggccgucGGCGUa -3'
miRNA:   3'- uaaCGGCG-UAGCUUGC--CGCGC---------UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 34901 0.66 0.526929
Target:  5'- --gGCCGCGcaGGGCGaGCuCGAGCGUc -3'
miRNA:   3'- uaaCGGCGUagCUUGC-CGcGCUCGCA- -5'
33174 5' -57.4 NC_007497.1 + 17279 0.68 0.369601
Target:  5'- -cUGCCuGCG-CGGGCGGCuGCgGGGCGg -3'
miRNA:   3'- uaACGG-CGUaGCUUGCCG-CG-CUCGCa -5'
33174 5' -57.4 NC_007497.1 + 23597 0.68 0.393866
Target:  5'- uAUUGCCGUAUCuccuGGucgcgcugcugggcGCGGCGgCGGGCGc -3'
miRNA:   3'- -UAACGGCGUAG----CU--------------UGCCGC-GCUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.