miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33175 5' -57.1 NC_007497.1 + 4754 0.66 0.597905
Target:  5'- ---cCGCGAUGAagcccuaCGAccuGGCUGCCGuaACg -3'
miRNA:   3'- gguaGCGCUACUg------GCU---CCGACGGC--UG- -5'
33175 5' -57.1 NC_007497.1 + 39448 0.66 0.597905
Target:  5'- gCUAUC-CGGUuACCGAGG-UGCCgGACa -3'
miRNA:   3'- -GGUAGcGCUAcUGGCUCCgACGG-CUG- -5'
33175 5' -57.1 NC_007497.1 + 42430 0.66 0.565306
Target:  5'- -gGUCGCGA-GACgCGAGcGCUGCgaaacaUGGCg -3'
miRNA:   3'- ggUAGCGCUaCUG-GCUC-CGACG------GCUG- -5'
33175 5' -57.1 NC_007497.1 + 34697 0.66 0.554536
Target:  5'- gCCAcCGCGgcGACCGccGGCUugGCCGcaGCa -3'
miRNA:   3'- -GGUaGCGCuaCUGGCu-CCGA--CGGC--UG- -5'
33175 5' -57.1 NC_007497.1 + 35812 0.66 0.554536
Target:  5'- gCCGUCGCG----UCGAgcGGCUGCCG-Cg -3'
miRNA:   3'- -GGUAGCGCuacuGGCU--CCGACGGCuG- -5'
33175 5' -57.1 NC_007497.1 + 41248 0.66 0.554536
Target:  5'- -aAUCcCGAUGugCGGgcGGCgaacGCCGACg -3'
miRNA:   3'- ggUAGcGCUACugGCU--CCGa---CGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 37050 0.67 0.533188
Target:  5'- aCGUCaCGAUG-CCGucgacGGCcGCCGACc -3'
miRNA:   3'- gGUAGcGCUACuGGCu----CCGaCGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 19328 0.67 0.533188
Target:  5'- -gAUCGCGGcuACCGAuggagaucgggGGC-GCCGACa -3'
miRNA:   3'- ggUAGCGCUacUGGCU-----------CCGaCGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 4 0.67 0.533188
Target:  5'- aCGU-GCGGUcuaGGCCGAGGCgGCCaucaGACu -3'
miRNA:   3'- gGUAgCGCUA---CUGGCUCCGaCGG----CUG- -5'
33175 5' -57.1 NC_007497.1 + 39486 0.67 0.533188
Target:  5'- aCCGUCGUacguAgCGGGGCaGCCGGCg -3'
miRNA:   3'- -GGUAGCGcuacUgGCUCCGaCGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 44680 0.67 0.522623
Target:  5'- gCCugcCGCGAUGGCCGcguccuuauuGGacuUGCCGGCc -3'
miRNA:   3'- -GGua-GCGCUACUGGCu---------CCg--ACGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 34593 0.67 0.522623
Target:  5'- gCUGUUGuCGGUGGUCGgcGGGCUGcCCGGCa -3'
miRNA:   3'- -GGUAGC-GCUACUGGC--UCCGAC-GGCUG- -5'
33175 5' -57.1 NC_007497.1 + 28520 0.67 0.522623
Target:  5'- gCG-CGCGGUcGaAUgGAGGCUGuCCGGCg -3'
miRNA:   3'- gGUaGCGCUA-C-UGgCUCCGAC-GGCUG- -5'
33175 5' -57.1 NC_007497.1 + 1534 0.67 0.511097
Target:  5'- aCCGaaUCGCGAUGacggaucGCCGAuaugagcaaaGGCU-CCGGCa -3'
miRNA:   3'- -GGU--AGCGCUAC-------UGGCU----------CCGAcGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 26571 0.67 0.491444
Target:  5'- gCAgaaCGUGAUGAacgugaCGucGCUGCCGGCc -3'
miRNA:   3'- gGUa--GCGCUACUg-----GCucCGACGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 4527 0.67 0.481241
Target:  5'- aUCGUCGaaaugGGUGGCUGGGuGCUGaUCGGCg -3'
miRNA:   3'- -GGUAGCg----CUACUGGCUC-CGAC-GGCUG- -5'
33175 5' -57.1 NC_007497.1 + 30417 0.68 0.461153
Target:  5'- aCAUUGCGGUGAUCGuGccguugauGUcGCCGACa -3'
miRNA:   3'- gGUAGCGCUACUGGCuC--------CGaCGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 22083 0.68 0.441516
Target:  5'- uCCGUCGCGGUGACgGAaGuCUaGUgGACg -3'
miRNA:   3'- -GGUAGCGCUACUGgCUcC-GA-CGgCUG- -5'
33175 5' -57.1 NC_007497.1 + 30125 0.68 0.432835
Target:  5'- aCCAUgGCGGUguauccgcacucggGACCGcGGUagcgccacuggcacgUGCCGACg -3'
miRNA:   3'- -GGUAgCGCUA--------------CUGGCuCCG---------------ACGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 2625 0.69 0.422362
Target:  5'- -aAUCGCaagGAUGcGCCGcGGCcGCCGGCg -3'
miRNA:   3'- ggUAGCG---CUAC-UGGCuCCGaCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.