miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33177 3' -57.5 NC_007497.1 + 30774 0.66 0.593848
Target:  5'- gCGUCGugUCGCgG-CGuagucGCGGCGUu -3'
miRNA:   3'- gGUAGCugAGCGgCaGCu----CGUCGCGc -5'
33177 3' -57.5 NC_007497.1 + 28103 0.66 0.593848
Target:  5'- ---cCGGCUgGCUGgugcgCGuGCGGCGCa -3'
miRNA:   3'- gguaGCUGAgCGGCa----GCuCGUCGCGc -5'
33177 3' -57.5 NC_007497.1 + 19731 0.66 0.583068
Target:  5'- cCCAcuUCGGCaUGCCGUgCGGGCAucGgGCa -3'
miRNA:   3'- -GGU--AGCUGaGCGGCA-GCUCGU--CgCGc -5'
33177 3' -57.5 NC_007497.1 + 34518 0.66 0.583068
Target:  5'- ---cUGGCUUGuguuCCGggaucaugCGAGCAGCGCGa -3'
miRNA:   3'- gguaGCUGAGC----GGCa-------GCUCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 29028 0.66 0.583068
Target:  5'- cCCGUUGuCgcgCGCC-UCGAGCAGaaauuuGCGg -3'
miRNA:   3'- -GGUAGCuGa--GCGGcAGCUCGUCg-----CGC- -5'
33177 3' -57.5 NC_007497.1 + 14776 0.66 0.572326
Target:  5'- uCCGUCuGGCUUGCuCGUCGccgacugcucGGCGGCaaaugaccGCGg -3'
miRNA:   3'- -GGUAG-CUGAGCG-GCAGC----------UCGUCG--------CGC- -5'
33177 3' -57.5 NC_007497.1 + 14372 0.66 0.561633
Target:  5'- gCCG-CGggccGCUCGCUGgCGAcGCAGUGCa -3'
miRNA:   3'- -GGUaGC----UGAGCGGCaGCU-CGUCGCGc -5'
33177 3' -57.5 NC_007497.1 + 36770 0.66 0.558435
Target:  5'- uCCGgcUCGACgccCGCCGccucgcgcagcggaUCGAGCcagaacGCGCGg -3'
miRNA:   3'- -GGU--AGCUGa--GCGGC--------------AGCUCGu-----CGCGC- -5'
33177 3' -57.5 NC_007497.1 + 34169 0.66 0.550995
Target:  5'- cUCGUCGACgUGuUCGUCGcGGCGacGCGCGg -3'
miRNA:   3'- -GGUAGCUGaGC-GGCAGC-UCGU--CGCGC- -5'
33177 3' -57.5 NC_007497.1 + 43011 0.66 0.544641
Target:  5'- gCGUCGACcCgGCCGguaucggggcuauccUCGAcgcacucgcgGCAGCGCGg -3'
miRNA:   3'- gGUAGCUGaG-CGGC---------------AGCU----------CGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 6716 0.66 0.540419
Target:  5'- -uGUCGACgUCGUucucaaCGUCGAuGUGGCGCa -3'
miRNA:   3'- ggUAGCUG-AGCG------GCAGCU-CGUCGCGc -5'
33177 3' -57.5 NC_007497.1 + 37097 0.67 0.529912
Target:  5'- aCGUCGACguacagCGUUcggGUC-AGCGGCGCGc -3'
miRNA:   3'- gGUAGCUGa-----GCGG---CAGcUCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 37044 0.67 0.529912
Target:  5'- aCGUCGACgucacgaUGCCGUCGA-CGGcCGCc -3'
miRNA:   3'- gGUAGCUGa------GCGGCAGCUcGUC-GCGc -5'
33177 3' -57.5 NC_007497.1 + 14865 0.67 0.529912
Target:  5'- gCgGUC-AUUUGCCGcCGAGCAGUcgGCGa -3'
miRNA:   3'- -GgUAGcUGAGCGGCaGCUCGUCG--CGC- -5'
33177 3' -57.5 NC_007497.1 + 12004 0.67 0.519481
Target:  5'- gCCGU-GACgaUUGCCG-CGAGCGGCGa- -3'
miRNA:   3'- -GGUAgCUG--AGCGGCaGCUCGUCGCgc -5'
33177 3' -57.5 NC_007497.1 + 27094 0.67 0.509131
Target:  5'- uUCA-CGGCgauccUGCCGUCGGGCGucgcacagucGCGCGc -3'
miRNA:   3'- -GGUaGCUGa----GCGGCAGCUCGU----------CGCGC- -5'
33177 3' -57.5 NC_007497.1 + 40234 0.67 0.509131
Target:  5'- gCCGUCGACgagGCCaacaucaagaUCGcGGCAGCGCa -3'
miRNA:   3'- -GGUAGCUGag-CGGc---------AGC-UCGUCGCGc -5'
33177 3' -57.5 NC_007497.1 + 1056 0.67 0.492757
Target:  5'- gCA-CGACUUGCCacacgagcacggcagGUCacgagGGGCAGCGCGc -3'
miRNA:   3'- gGUaGCUGAGCGG---------------CAG-----CUCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 5827 0.67 0.488701
Target:  5'- cCCcgC-AUUUGCCuGUCGuGCGGUGCGg -3'
miRNA:   3'- -GGuaGcUGAGCGG-CAGCuCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 37797 0.67 0.488701
Target:  5'- aCGUgGugUCGCgCGU-GAGCGGCacGCGa -3'
miRNA:   3'- gGUAgCugAGCG-GCAgCUCGUCG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.