miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 154125 0.69 0.65594
Target:  5'- cGCCAaccUGCaGGcCCUGGccCCCUCCCc -3'
miRNA:   3'- uCGGUa--ACGgUC-GGACCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 18907 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 31182 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 34251 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 46865 0.69 0.696011
Target:  5'- gGGCCAgagcgGCCcuuGCCUGGgUCUCUCa- -3'
miRNA:   3'- -UCGGUaa---CGGu--CGGACCaAGGGAGgg -5'
33266 5' -58.1 NC_007605.1 + 25044 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 151575 0.69 0.676046
Target:  5'- uGGCCGUgGCCAGguacgggCUGGUgggcUCCCUCUg -3'
miRNA:   3'- -UCGGUAaCGGUCg------GACCA----AGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 74490 0.69 0.676046
Target:  5'- gAGCCGcUG-CGGCCUGGUUCugacgcugcaCCUgCCg -3'
miRNA:   3'- -UCGGUaACgGUCGGACCAAG----------GGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 21975 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 84376 0.68 0.715768
Target:  5'- cAGCCAagaGCCAcGCCUGaaUCCCaggCCCc -3'
miRNA:   3'- -UCGGUaa-CGGU-CGGACcaAGGGa--GGG- -5'
33266 5' -58.1 NC_007605.1 + 155197 0.68 0.744859
Target:  5'- cAGCCucGUUGgUGGCCgugGGgaagCCCUCCUc -3'
miRNA:   3'- -UCGG--UAACgGUCGGa--CCaa--GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 39955 0.68 0.72652
Target:  5'- cGCCuggAUUGCCGGCugggggCUGGggucccgggacgccCCCUCCCu -3'
miRNA:   3'- uCGG---UAACGGUCG------GACCaa------------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 25125 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 28194 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 31263 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 34332 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 2925 0.68 0.716749
Target:  5'- gGGCCAUU-CCAGCCaUGGagcggacugacggcCCCUCCg -3'
miRNA:   3'- -UCGGUAAcGGUCGG-ACCaa------------GGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 52446 0.68 0.724572
Target:  5'- cGUCGUUGCU-GCCgcgggUGGUUgagggcaugccccCCCUCCCg -3'
miRNA:   3'- uCGGUAACGGuCGG-----ACCAA-------------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 123358 0.68 0.725546
Target:  5'- uAGCCGgugcacaGCCcuguGCCUGGccCUCUCCCc -3'
miRNA:   3'- -UCGGUaa-----CGGu---CGGACCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 117564 0.68 0.735246
Target:  5'- uGGCCAUUGCCucaaucauuggGGaauCCUGcc-CCCUCCCc -3'
miRNA:   3'- -UCGGUAACGG-----------UC---GGACcaaGGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.