miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33268 5' -58.8 NC_007605.1 + 112749 0.66 0.819516
Target:  5'- aGGUUCUCGGuCAGaCGGccGCGCuGCGAg- -3'
miRNA:   3'- -CCAAGGGUC-GUC-GUC--CGCGuCGCUga -5'
33268 5' -58.8 NC_007605.1 + 111778 0.73 0.385752
Target:  5'- gGGUUCCUgaGGCAGCAGGCagagcuguuuuGCcauuuuauucaGGCGGCUa -3'
miRNA:   3'- -CCAAGGG--UCGUCGUCCG-----------CG-----------UCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 105633 0.67 0.765275
Target:  5'- aGGUUCagguCCAGUAGCAGGagacccuCGCuguGUGGCg -3'
miRNA:   3'- -CCAAG----GGUCGUCGUCC-------GCGu--CGCUGa -5'
33268 5' -58.8 NC_007605.1 + 103044 0.67 0.756867
Target:  5'- uGGgUCCCGGCGGCAacaacccagcGGCGuCAGCc--- -3'
miRNA:   3'- -CCaAGGGUCGUCGU----------CCGC-GUCGcuga -5'
33268 5' -58.8 NC_007605.1 + 78389 0.67 0.766204
Target:  5'- uGGggCCUGuGCuuGCAGGUGCGGUGAg- -3'
miRNA:   3'- -CCaaGGGU-CGu-CGUCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 74277 0.67 0.728253
Target:  5'- ---cUCCGcCGGCAGGUGCAGCGuCa -3'
miRNA:   3'- ccaaGGGUcGUCGUCCGCGUCGCuGa -5'
33268 5' -58.8 NC_007605.1 + 71373 0.71 0.520089
Target:  5'- --cUCCCGGgGGCAGGUGuCGGCG-CUu -3'
miRNA:   3'- ccaAGGGUCgUCGUCCGC-GUCGCuGA- -5'
33268 5' -58.8 NC_007605.1 + 64466 0.66 0.819516
Target:  5'- aGGgcagCCCuGCAGCGGGCcagGCcggagauugagAGUGACa -3'
miRNA:   3'- -CCaa--GGGuCGUCGUCCG---CG-----------UCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 62772 0.66 0.802317
Target:  5'- --cUCCgGGCGGCcuccuuuuccAGGCGCAGCuucGGCc -3'
miRNA:   3'- ccaAGGgUCGUCG----------UCCGCGUCG---CUGa -5'
33268 5' -58.8 NC_007605.1 + 62589 0.7 0.598866
Target:  5'- aGGccgCCCggaguaGGUAGUAGGCGUGGUGGCg -3'
miRNA:   3'- -CCaa-GGG------UCGUCGUCCGCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 62220 0.69 0.659089
Target:  5'- ---gCCCGGCGGCGGGCgGUagagauccugGGCGugUa -3'
miRNA:   3'- ccaaGGGUCGUCGUCCG-CG----------UCGCugA- -5'
33268 5' -58.8 NC_007605.1 + 61430 0.73 0.393986
Target:  5'- ---aCCCAcagccgucGCGGCGGGgGCGGCGGCg -3'
miRNA:   3'- ccaaGGGU--------CGUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 54939 0.66 0.819516
Target:  5'- ---aCUCAGCcGC-GGCaGCAGCGGCg -3'
miRNA:   3'- ccaaGGGUCGuCGuCCG-CGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 52860 0.73 0.402333
Target:  5'- aGGUgUCCCAGUAGgAgucGGCgGCGGCGGCg -3'
miRNA:   3'- -CCA-AGGGUCGUCgU---CCG-CGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 52399 0.66 0.784524
Target:  5'- gGGUggaCCGGCgaugcgguGGCGGGUGaGGCGGCg -3'
miRNA:   3'- -CCAag-GGUCG--------UCGUCCGCgUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 49671 0.66 0.819516
Target:  5'- cGG-UCCCAGCGGa---UGCGGCGGCc -3'
miRNA:   3'- -CCaAGGGUCGUCguccGCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 49032 0.7 0.588871
Target:  5'- gGGgcCgCCAGCccgAGCGGGCGCucGGUGGCUc -3'
miRNA:   3'- -CCaaG-GGUCG---UCGUCCGCG--UCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 48732 0.67 0.766204
Target:  5'- gGGgaCCC-GCGGCAGGCacguuCAGCaGACa -3'
miRNA:   3'- -CCaaGGGuCGUCGUCCGc----GUCG-CUGa -5'
33268 5' -58.8 NC_007605.1 + 45405 0.67 0.756867
Target:  5'- cGGUUUCUGGUAgGCAGGUgGCAGC-ACa -3'
miRNA:   3'- -CCAAGGGUCGU-CGUCCG-CGUCGcUGa -5'
33268 5' -58.8 NC_007605.1 + 40608 0.66 0.810134
Target:  5'- gGGUgcacaccUCCCAGcCGGCccGGCGUccuuGCGGCg -3'
miRNA:   3'- -CCA-------AGGGUC-GUCGu-CCGCGu---CGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.