miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 5' -53.3 NC_007605.1 + 116168 0.66 0.978857
Target:  5'- gGCCGGGAUGUga------GGCCucAGCg -3'
miRNA:   3'- gCGGCCCUACGauuacaagUCGG--UCG- -5'
33270 5' -53.3 NC_007605.1 + 72272 0.66 0.978857
Target:  5'- uGCCaGGGUGCUcAUGagCgagGGCCAGa -3'
miRNA:   3'- gCGGcCCUACGAuUACaaG---UCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 144089 0.66 0.978857
Target:  5'- -cCCGGGGUGCUGggGUgggggaUgGGCUcaGGCa -3'
miRNA:   3'- gcGGCCCUACGAUuaCA------AgUCGG--UCG- -5'
33270 5' -53.3 NC_007605.1 + 41273 0.66 0.978857
Target:  5'- -cCCGGGGUGCUGggGUgggggaUgGGCUcaGGCa -3'
miRNA:   3'- gcGGCCCUACGAUuaCA------AgUCGG--UCG- -5'
33270 5' -53.3 NC_007605.1 + 169645 0.66 0.973869
Target:  5'- gGUCGGGggGCgccgccggGcgCAGCCAuGCg -3'
miRNA:   3'- gCGGCCCuaCGauua----CaaGUCGGU-CG- -5'
33270 5' -53.3 NC_007605.1 + 159034 0.66 0.973327
Target:  5'- gCGCCGGGcgGacgcgg-UCAGCCccGGCc -3'
miRNA:   3'- -GCGGCCCuaCgauuacaAGUCGG--UCG- -5'
33270 5' -53.3 NC_007605.1 + 61943 0.66 0.972777
Target:  5'- aGCCGGGcgGCgucaaa--GGCCAGg -3'
miRNA:   3'- gCGGCCCuaCGauuacaagUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 73597 0.66 0.971077
Target:  5'- gGcCCGGGA-GCUGGUGgagcUCGcgcGCUGGCa -3'
miRNA:   3'- gC-GGCCCUaCGAUUACa---AGU---CGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 62009 0.66 0.971077
Target:  5'- gGCCGGGAUgGCggcagaGAUGga-GGCCcuGGCc -3'
miRNA:   3'- gCGGCCCUA-CGa-----UUACaagUCGG--UCG- -5'
33270 5' -53.3 NC_007605.1 + 96571 0.66 0.971077
Target:  5'- gGCCGGGGUcgaggaGgUAGUGga-GGCCGGg -3'
miRNA:   3'- gCGGCCCUA------CgAUUACaagUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 99806 0.66 0.971077
Target:  5'- aGCCuGGGcAUGC--GUGaaCuGCCAGCg -3'
miRNA:   3'- gCGG-CCC-UACGauUACaaGuCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 143432 0.66 0.969303
Target:  5'- aCGCUcggGGGGUGCacaccuccCAGCCGGCc -3'
miRNA:   3'- -GCGG---CCCUACGauuacaa-GUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 40617 0.66 0.969303
Target:  5'- aCGCUcggGGGGUGCacaccuccCAGCCGGCc -3'
miRNA:   3'- -GCGG---CCCUACGauuacaa-GUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 91724 0.66 0.967766
Target:  5'- aGCCGGGAagGU--AUGUUCcugccaaAGCCGGa -3'
miRNA:   3'- gCGGCCCUa-CGauUACAAG-------UCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 111009 0.66 0.967136
Target:  5'- gGCCGaGGAUGggcaggacaaggccCUGGUGgacuaccugUCGGCCuGCa -3'
miRNA:   3'- gCGGC-CCUAC--------------GAUUACa--------AGUCGGuCG- -5'
33270 5' -53.3 NC_007605.1 + 136871 0.66 0.964863
Target:  5'- gCGCCGGGAgacGCUGuccuaCGGCCAc- -3'
miRNA:   3'- -GCGGCCCUa--CGAUuacaaGUCGGUcg -5'
33270 5' -53.3 NC_007605.1 + 159495 0.66 0.964863
Target:  5'- gGCCGGGcu-CUcGUGcccCAGCCGGCc -3'
miRNA:   3'- gCGGCCCuacGAuUACaa-GUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 160917 0.67 0.961429
Target:  5'- uGUCGGGGcUGCUGGcggcggcGUaCAGCCAGg -3'
miRNA:   3'- gCGGCCCU-ACGAUUa------CAaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 56542 0.67 0.957769
Target:  5'- aGCUGGGG----AAU-UUCAGCCAGCa -3'
miRNA:   3'- gCGGCCCUacgaUUAcAAGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 49030 0.67 0.957769
Target:  5'- gGCCGccagcccgagcGGgcGCUcGGUGgcUCAGCCAGCc -3'
miRNA:   3'- gCGGC-----------CCuaCGA-UUACa-AGUCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.