miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33271 3' -58.1 NC_007605.1 + 32006 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 90219 0.66 0.868598
Target:  5'- uGCCGCcccuccauGAgcccCACCGUCCgcuGCCGCCCc -3'
miRNA:   3'- -UGGUGu-------CU----GUGGCAGGag-UGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 159540 0.66 0.868598
Target:  5'- cCCG-GGACGCCuccUCCUCGCCucgGCCCa -3'
miRNA:   3'- uGGUgUCUGUGGc--AGGAGUGG---UGGGc -5'
33271 3' -58.1 NC_007605.1 + 47373 0.66 0.867151
Target:  5'- uCCGCAGGCACCGgacacgcgagaCUCGCCguauGCgCGg -3'
miRNA:   3'- uGGUGUCUGUGGCag---------GAGUGG----UGgGC- -5'
33271 3' -58.1 NC_007605.1 + 13593 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 35075 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 153211 0.66 0.86128
Target:  5'- gGCCACGGgaACGCCGU----GCCGCUCGg -3'
miRNA:   3'- -UGGUGUC--UGUGGCAggagUGGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 87439 0.66 0.868598
Target:  5'- aAUCAuCAGugACCGUggagCC-CGCCcACCCGa -3'
miRNA:   3'- -UGGU-GUCugUGGCA----GGaGUGG-UGGGC- -5'
33271 3' -58.1 NC_007605.1 + 82634 0.66 0.86128
Target:  5'- cAUgGCAGGCcCCGcCCUCggACC-CCCGa -3'
miRNA:   3'- -UGgUGUCUGuGGCaGGAG--UGGuGGGC- -5'
33271 3' -58.1 NC_007605.1 + 60066 0.66 0.875715
Target:  5'- gGCCcUGGugGaCGUCCUCACCAUCa- -3'
miRNA:   3'- -UGGuGUCugUgGCAGGAGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 108274 0.66 0.856795
Target:  5'- uCCACAGcCACCGgccaagguccugggCCUC-CCACCa- -3'
miRNA:   3'- uGGUGUCuGUGGCa-------------GGAGuGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 85224 0.66 0.838174
Target:  5'- cCCAC-GcCACC-UCCUCagguGCCGCCCGu -3'
miRNA:   3'- uGGUGuCuGUGGcAGGAG----UGGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 150648 0.66 0.867875
Target:  5'- gUCGCAGACccaGCCcUCCUCGgcccuguCCACCUGu -3'
miRNA:   3'- uGGUGUCUG---UGGcAGGAGU-------GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 22800 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 50374 0.66 0.837376
Target:  5'- uGCCcccgaggACGGGCGCCGgCCgccagCGCC-CCCGu -3'
miRNA:   3'- -UGG-------UGUCUGUGGCaGGa----GUGGuGGGC- -5'
33271 3' -58.1 NC_007605.1 + 117338 0.66 0.846062
Target:  5'- uCCGCAucaGGCACCGgaaUCGCCGCCg- -3'
miRNA:   3'- uGGUGU---CUGUGGCaggAGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 19731 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 16662 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 66621 0.66 0.838174
Target:  5'- uUCGCGGcucACAUUGUCCUCACCAaggaCUGc -3'
miRNA:   3'- uGGUGUC---UGUGGCAGGAGUGGUg---GGC- -5'
33271 3' -58.1 NC_007605.1 + 2561 0.66 0.838174
Target:  5'- uGCCGCGGGgACCaUCCagGCCaacuGCCCa -3'
miRNA:   3'- -UGGUGUCUgUGGcAGGagUGG----UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.