miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33271 3' -58.1 NC_007605.1 + 163980 0.72 0.543798
Target:  5'- uGCCGCAaaggagcGGCACCGUCaggCACCugugGCCCGc -3'
miRNA:   3'- -UGGUGU-------CUGUGGCAGga-GUGG----UGGGC- -5'
33271 3' -58.1 NC_007605.1 + 16102 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 19171 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 22240 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 25309 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 28378 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 31447 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 34516 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 136872 0.72 0.525492
Target:  5'- cGCCgGgAGACGCUGUCCUacgGCCACaCCGg -3'
miRNA:   3'- -UGG-UgUCUGUGGCAGGAg--UGGUG-GGC- -5'
33271 3' -58.1 NC_007605.1 + 13033 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 81513 0.74 0.442504
Target:  5'- -aCACAGGCugCGgggcaggCCUUugCACCCGu -3'
miRNA:   3'- ugGUGUCUGugGCa------GGAGugGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 33813 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 114113 0.77 0.281763
Target:  5'- uCCACAGGCACCG-CCUCACcCACUg- -3'
miRNA:   3'- uGGUGUCUGUGGCaGGAGUG-GUGGgc -5'
33271 3' -58.1 NC_007605.1 + 12330 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 15399 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 18468 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 21537 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 24606 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 27675 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 30744 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.