miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33271 3' -58.1 NC_007605.1 + 2561 0.66 0.838174
Target:  5'- uGCCGCGGGgACCaUCCagGCCaacuGCCCa -3'
miRNA:   3'- -UGGUGUCUgUGGcAGGagUGG----UGGGc -5'
33271 3' -58.1 NC_007605.1 + 4231 0.67 0.80492
Target:  5'- gGCCACGcGCGuaGUCaCUCGCCGCCg- -3'
miRNA:   3'- -UGGUGUcUGUggCAG-GAGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 6897 1.09 0.002333
Target:  5'- aACCACAGACACCGUCCUCACCACCCGg -3'
miRNA:   3'- -UGGUGUCUGUGGCAGGAGUGGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 12330 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 12666 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 13033 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 13593 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 15399 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 15735 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 16102 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 16662 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 18468 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 18804 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 19171 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 19731 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 21537 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 21873 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 22240 0.73 0.478536
Target:  5'- gGCCcCAGAgGCCGguUCCUCGCCccuucCCCGg -3'
miRNA:   3'- -UGGuGUCUgUGGC--AGGAGUGGu----GGGC- -5'
33271 3' -58.1 NC_007605.1 + 22800 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 24606 0.74 0.433736
Target:  5'- aGCCAgCGGGCACCcgagGUCC-CAgCACCCGg -3'
miRNA:   3'- -UGGU-GUCUGUGG----CAGGaGUgGUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.