miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33272 3' -46.5 NC_007605.1 + 68704 0.66 0.999891
Target:  5'- uAUGUCUGG--GGCGUuguUGgaGUCCUGu -3'
miRNA:   3'- -UAUAGACCuaUCGUAu--ACgaUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 54441 0.66 0.999812
Target:  5'- -----cGGAUGGCAUcgGCcgccGUCCUGg -3'
miRNA:   3'- uauagaCCUAUCGUAuaCGa---UAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 50111 0.66 0.999757
Target:  5'- -----cGGAUGGCGgguaauacAUGCUAUCCUu -3'
miRNA:   3'- uauagaCCUAUCGUa-------UACGAUAGGAu -5'
33272 3' -46.5 NC_007605.1 + 9287 0.68 0.998209
Target:  5'- -----cGGGUAGCAUAUGCU-UCCc- -3'
miRNA:   3'- uauagaCCUAUCGUAUACGAuAGGau -5'
33272 3' -46.5 NC_007605.1 + 7975 0.69 0.997834
Target:  5'- -gAUUaGGAUA-CAUAUGCUAUCCa- -3'
miRNA:   3'- uaUAGaCCUAUcGUAUACGAUAGGau -5'
33272 3' -46.5 NC_007605.1 + 73720 0.69 0.997834
Target:  5'- ---cCUGGcugAGCAUGUGCgUGUCCa- -3'
miRNA:   3'- uauaGACCua-UCGUAUACG-AUAGGau -5'
33272 3' -46.5 NC_007605.1 + 156785 0.7 0.991822
Target:  5'- -aGUCUGGGUAGCGUggGUcaGUCCa- -3'
miRNA:   3'- uaUAGACCUAUCGUAuaCGa-UAGGau -5'
33272 3' -46.5 NC_007605.1 + 7915 0.74 0.94282
Target:  5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7825 0.74 0.94282
Target:  5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7649 0.74 0.94282
Target:  5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7589 0.74 0.94282
Target:  5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7499 0.74 0.94282
Target:  5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7439 0.75 0.907721
Target:  5'- -cAUgaGGAUAGCAUAUGCUAcCCg- -3'
miRNA:   3'- uaUAgaCCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7905 0.75 0.900872
Target:  5'- uAUAUCUGGGUAGCAUAUaCUAcCCa- -3'
miRNA:   3'- -UAUAGACCUAUCGUAUAcGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7764 0.76 0.88634
Target:  5'- cUAUUaGGAUAGCAUAUGCUAcCCg- -3'
miRNA:   3'- uAUAGaCCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7998 0.8 0.69316
Target:  5'- gAUAUUUGGGUAGUAUAUGCUAcCCa- -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7703 0.8 0.69316
Target:  5'- gAUAUUUGGGUAGUAUAUGCUAcCCa- -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUaGGau -5'
33272 3' -46.5 NC_007605.1 + 7933 0.83 0.537351
Target:  5'- -gAUUaGGGUAGUAUAUGCUAUCCUAa -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7679 0.84 0.505091
Target:  5'- -gAUUaGGAUAGCAUAUGCUAUCCa- -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUAGGau -5'
33272 3' -46.5 NC_007605.1 + 7639 0.92 0.209084
Target:  5'- uGUAUCcGGGUAGCAUAUGCUAUCCUc -3'
miRNA:   3'- -UAUAGaCCUAUCGUAUACGAUAGGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.